Variant report
| Variant | rs59048647 |
|---|---|
| Chromosome Location | chr2:187719848-187719849 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000163012 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10166117 | 0.90[EUR][1000 genomes] |
| rs11885224 | 0.90[EUR][1000 genomes] |
| rs13407429 | 0.80[EUR][1000 genomes] |
| rs13428262 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs13431108 | 0.87[EUR][1000 genomes] |
| rs13431163 | 0.90[EUR][1000 genomes] |
| rs13432873 | 0.80[EUR][1000 genomes] |
| rs1451556 | 0.90[EUR][1000 genomes] |
| rs1451561 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16828310 | 0.91[EUR][1000 genomes] |
| rs16828421 | 0.85[AFR][1000 genomes] |
| rs16828423 | 0.85[AFR][1000 genomes] |
| rs16828441 | 0.85[AFR][1000 genomes] |
| rs17751491 | 0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2084753 | 0.80[EUR][1000 genomes] |
| rs2084754 | 0.80[EUR][1000 genomes] |
| rs41404244 | 0.93[EUR][1000 genomes] |
| rs61626504 | 0.80[EUR][1000 genomes] |
| rs62171921 | 0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6725956 | 0.90[EUR][1000 genomes] |
| rs6726153 | 0.90[EUR][1000 genomes] |
| rs6738033 | 0.91[EUR][1000 genomes] |
| rs67477382 | 0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv428069 | chr2:187575692-187766209 | ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv949700 | chr2:187713412-188361211 | Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
