Variant report

Variant	rs17751491
Chromosome Location	chr2:187734149-187734150
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10166117	0.95[EUR][1000 genomes]
rs10169570	0.82[EUR][1000 genomes]
rs10169582	0.82[EUR][1000 genomes]
rs10169671	0.82[EUR][1000 genomes]
rs10183672	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs10200056	0.82[CEU][hapmap]
rs10200250	0.87[CEU][hapmap]
rs10201183	0.82[EUR][1000 genomes]
rs10201512	0.80[EUR][1000 genomes]
rs10207244	0.82[EUR][1000 genomes]
rs10207487	0.82[EUR][1000 genomes]
rs10210233	0.82[EUR][1000 genomes]
rs10210806	0.87[CEU][hapmap]
rs10211050	0.87[CEU][hapmap]
rs11885224	0.95[EUR][1000 genomes]
rs11892669	0.82[EUR][1000 genomes]
rs13407429	0.85[EUR][1000 genomes]
rs13428262	0.96[EUR][1000 genomes]
rs13431108	0.92[EUR][1000 genomes]
rs13431163	0.95[EUR][1000 genomes]
rs13432873	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs1451556	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1451561	0.93[EUR][1000 genomes]
rs16828310	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16828421	0.85[AFR][1000 genomes]
rs16828423	0.85[AFR][1000 genomes]
rs16828441	0.85[AFR][1000 genomes]
rs2084752	0.81[EUR][1000 genomes]
rs2084753	0.85[EUR][1000 genomes]
rs2084754	0.85[EUR][1000 genomes]
rs28475061	0.82[EUR][1000 genomes]
rs28740839	0.82[EUR][1000 genomes]
rs41404244	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59048647	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61626504	0.85[EUR][1000 genomes]
rs62171892	0.82[EUR][1000 genomes]
rs62171921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6725956	0.95[EUR][1000 genomes]
rs6726153	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs6738033	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs67477382	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72895306	0.82[EUR][1000 genomes]
rs72895351	1.00[ASN][1000 genomes]
rs7581809	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv949700	chr2:187713412-188361211	Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187733600-187736400	Weak transcription	HUVEC	blood vessel

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