Variant report

Variant	rs10169671
Chromosome Location	chr2:187707891-187707892
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10164815	1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10166117	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10169570	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10169582	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10172225	1.00[ASN][1000 genomes]
rs10175178	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10178860	1.00[ASN][1000 genomes]
rs10179175	1.00[ASN][1000 genomes]
rs10181270	1.00[CHB][hapmap];0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10183672	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10187599	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10188450	1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10188850	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10188869	1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10189037	1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10191094	1.00[ASN][1000 genomes]
rs10191209	1.00[ASN][1000 genomes]
rs10195632	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10195758	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10200056	1.00[CHB][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10200250	1.00[CHB][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10201183	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10201512	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10202588	1.00[CHB][hapmap]
rs10204903	1.00[CHB][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10207244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10210233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10210806	1.00[CHB][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10211050	1.00[CHB][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11885224	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11892669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11894819	1.00[ASN][1000 genomes]
rs11898022	1.00[ASN][1000 genomes]
rs11898112	1.00[ASN][1000 genomes]
rs11898665	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11898741	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11903271	1.00[ASN][1000 genomes]
rs13399866	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13400804	1.00[CHB][hapmap];0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13401173	0.83[ASN][1000 genomes]
rs13401579	1.00[ASN][1000 genomes]
rs13407429	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13414169	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13426438	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13428262	0.85[EUR][1000 genomes]
rs13431108	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13431163	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13432873	1.00[CHB][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1451556	1.00[CHB][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16828310	0.82[EUR][1000 genomes]
rs17751491	0.82[EUR][1000 genomes]
rs17852915	1.00[ASN][1000 genomes]
rs17852916	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17856918	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2084752	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2084753	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2084754	1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28475061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28740839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35121986	1.00[ASN][1000 genomes]
rs41404244	0.83[EUR][1000 genomes]
rs4429438	1.00[ASN][1000 genomes]
rs4545967	1.00[ASN][1000 genomes]
rs61626504	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62171870	0.91[ASN][1000 genomes]
rs62171892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62171921	0.82[EUR][1000 genomes]
rs6434197	1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6708289	1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6711860	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6722473	1.00[ASN][1000 genomes]
rs6725956	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6726153	1.00[CHB][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6733279	1.00[ASN][1000 genomes]
rs6736846	0.83[ASN][1000 genomes]
rs6738033	1.00[CHB][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6744956	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6745065	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6745572	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6745642	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs67477382	0.83[EUR][1000 genomes]
rs6750961	1.00[ASN][1000 genomes]
rs6751828	1.00[ASN][1000 genomes]
rs6752200	1.00[ASN][1000 genomes]
rs6760362	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs72895306	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7581809	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7595459	1.00[ASN][1000 genomes]
rs7598838	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187705600-187708400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr2:187705800-187708600	Enhancers	Osteobl	bone
3	chr2:187706000-187708400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:187706000-187708400	Enhancers	NHDF-Ad	bronchial
5	chr2:187706800-187713400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:187707400-187712800	Weak transcription	NHLF	lung
7	chr2:187707800-187708600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:187707800-187708600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:187707800-187708600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links