Variant report

Variant	rs10201183
Chromosome Location	chr2:187707097-187707098
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:187706773..187707481-chr20:52398178..52399052,2	MCF-7	breast:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10164815	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10166117	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10169570	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10169582	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10169671	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10172225	1.00[ASN][1000 genomes]
rs10175178	1.00[ASN][1000 genomes]
rs10178860	1.00[ASN][1000 genomes]
rs10179175	1.00[ASN][1000 genomes]
rs10181270	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10183672	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10187599	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10188450	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10188850	1.00[ASN][1000 genomes]
rs10188869	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10189037	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10191094	1.00[ASN][1000 genomes]
rs10191209	1.00[ASN][1000 genomes]
rs10195632	1.00[ASN][1000 genomes]
rs10195758	1.00[ASN][1000 genomes]
rs10200056	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10200250	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10201512	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10204903	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10207244	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207487	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10210233	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10210806	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10211050	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11885224	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11892669	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11894819	1.00[ASN][1000 genomes]
rs11898022	1.00[ASN][1000 genomes]
rs11898112	1.00[ASN][1000 genomes]
rs11898665	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11898741	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11903271	1.00[ASN][1000 genomes]
rs13399866	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13400804	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13401173	0.83[ASN][1000 genomes]
rs13401579	1.00[ASN][1000 genomes]
rs13407429	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13414169	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13426438	1.00[ASN][1000 genomes]
rs13428262	0.85[EUR][1000 genomes]
rs13431108	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13431163	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13432873	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1451556	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16828310	0.82[EUR][1000 genomes]
rs17751491	0.82[EUR][1000 genomes]
rs17852915	1.00[ASN][1000 genomes]
rs17852916	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17856918	1.00[ASN][1000 genomes]
rs2084752	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2084753	1.00[CEU][hapmap];0.83[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2084754	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28475061	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28740839	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35121986	1.00[ASN][1000 genomes]
rs41404244	0.83[EUR][1000 genomes]
rs4429438	1.00[ASN][1000 genomes]
rs4545967	1.00[ASN][1000 genomes]
rs61626504	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62171870	0.91[ASN][1000 genomes]
rs62171892	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62171921	0.82[EUR][1000 genomes]
rs6434197	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6708289	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6711860	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6722473	1.00[ASN][1000 genomes]
rs6725956	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6726153	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6733279	1.00[ASN][1000 genomes]
rs6736846	0.83[ASN][1000 genomes]
rs6738033	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6744956	1.00[ASN][1000 genomes]
rs6745065	1.00[ASN][1000 genomes]
rs6745572	1.00[ASN][1000 genomes]
rs6745642	1.00[ASN][1000 genomes]
rs67477382	0.83[EUR][1000 genomes]
rs6750961	1.00[ASN][1000 genomes]
rs6751828	1.00[ASN][1000 genomes]
rs6752200	1.00[ASN][1000 genomes]
rs6760362	1.00[ASN][1000 genomes]
rs72895306	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7581809	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7595459	1.00[ASN][1000 genomes]
rs7598838	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187705600-187708400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr2:187705800-187708600	Enhancers	Osteobl	bone
3	chr2:187706000-187708400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:187706000-187708400	Enhancers	NHDF-Ad	bronchial
5	chr2:187706800-187707200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr2:187706800-187707200	Weak transcription	NHLF	lung
7	chr2:187706800-187707800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:187706800-187713400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:187707000-187707800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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