Variant report

Variant	rs41404244
Chromosome Location	chr2:187727975-187727976
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:187727496..187728175-chr2:188317935..188318450,2	K562	blood:
2	chr2:187726275..187728364-chr2:187735972..187738135,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10164815	0.82[GIH][hapmap]
rs10166117	0.97[EUR][1000 genomes]
rs10169570	0.83[EUR][1000 genomes]
rs10169582	0.83[EUR][1000 genomes]
rs10169671	0.83[EUR][1000 genomes]
rs10183672	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs10187599	0.81[EUR][1000 genomes]
rs10189037	0.81[GIH][hapmap]
rs10200056	0.87[CEU][hapmap];0.94[GIH][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];0.81[EUR][1000 genomes]
rs10200250	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs10201183	0.83[EUR][1000 genomes]
rs10201512	0.82[EUR][1000 genomes]
rs10207244	0.83[EUR][1000 genomes]
rs10207487	0.83[EUR][1000 genomes]
rs10210233	0.83[EUR][1000 genomes]
rs10210806	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs10211050	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs11885224	0.97[EUR][1000 genomes]
rs11892669	0.83[EUR][1000 genomes]
rs13400804	0.82[GIH][hapmap]
rs13407429	0.86[EUR][1000 genomes]
rs13428262	0.95[EUR][1000 genomes]
rs13431108	0.93[EUR][1000 genomes]
rs13431163	0.97[EUR][1000 genomes]
rs13432873	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs1451556	1.00[CEU][hapmap];0.94[GIH][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];0.97[EUR][1000 genomes]
rs1451561	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16828310	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17751491	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2084752	0.82[EUR][1000 genomes]
rs2084753	0.86[EUR][1000 genomes]
rs2084754	0.86[EUR][1000 genomes]
rs2122875	0.80[AFR][1000 genomes]
rs28475061	0.83[EUR][1000 genomes]
rs28740839	0.83[EUR][1000 genomes]
rs59048647	0.93[EUR][1000 genomes]
rs61626504	0.86[EUR][1000 genomes]
rs62171892	0.83[EUR][1000 genomes]
rs62171921	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6434197	0.82[GIH][hapmap]
rs6725956	0.97[EUR][1000 genomes]
rs6726153	1.00[CEU][hapmap];0.94[GIH][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];0.97[EUR][1000 genomes]
rs6738033	1.00[CEU][hapmap];0.94[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs67477382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72895306	0.83[EUR][1000 genomes]
rs72895351	1.00[ASN][1000 genomes]
rs7581809	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv949700	chr2:187713412-188361211	Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187726600-187728800	Enhancers	HUVEC	blood vessel
2	chr2:187727600-187728000	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr2:187727800-187728200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:187727800-187728400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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