Variant report

Variant	rs59081829
Chromosome Location	chr4:148676408-148676409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:148652006..148653543-chr4:148675428..148676957,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000071205	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2358097	0.89[AMR][1000 genomes]
rs4379049	0.89[AMR][1000 genomes]
rs4496566	0.89[AMR][1000 genomes]
rs55706053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6849336	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7677034	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7684897	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv880242	chr4:148659137-148727355	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148655600-148681600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:148656600-148676800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr4:148663600-148688800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr4:148664600-148682200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr4:148665800-148680800	Weak transcription	Thymus	Thymus
6	chr4:148669400-148682000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:148670200-148676800	Weak transcription	Fetal Intestine Large	intestine
8	chr4:148670200-148693200	Weak transcription	Esophagus	oesophagus
9	chr4:148670400-148676600	Weak transcription	Adipose Nuclei	Adipose
10	chr4:148670400-148678400	Weak transcription	Right Ventricle	heart
11	chr4:148671600-148676600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr4:148671600-148677000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr4:148673000-148678600	Weak transcription	Gastric	stomach
14	chr4:148674200-148676800	Enhancers	Osteobl	bone
15	chr4:148674200-148678000	Enhancers	NHDF-Ad	bronchial
16	chr4:148674200-148678400	Enhancers	Stomach Mucosa	stomach
17	chr4:148674400-148676600	Enhancers	NHLF	lung
18	chr4:148674400-148677600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:148674400-148679200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:148674600-148676800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr4:148674800-148677400	Enhancers	GM12878-XiMat	blood
22	chr4:148674800-148678200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:148675000-148676600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr4:148675000-148677000	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr4:148675000-148677000	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr4:148675000-148677000	Enhancers	Right Atrium	heart
27	chr4:148675000-148677800	Enhancers	HSMM	muscle
28	chr4:148675000-148678000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr4:148675000-148678200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr4:148675400-148676600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr4:148675400-148676600	Enhancers	Stomach Smooth Muscle	stomach
32	chr4:148675400-148678400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr4:148675400-148678800	Weak transcription	Lung	lung
34	chr4:148675600-148676600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr4:148675600-148676600	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr4:148675600-148676600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr4:148675600-148676600	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr4:148675600-148676600	Enhancers	A549	lung
39	chr4:148675600-148676800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr4:148675600-148676800	Weak transcription	Brain Hippocampus Middle	brain
41	chr4:148675600-148676800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr4:148675600-148676800	Weak transcription	Fetal Heart	heart
43	chr4:148675600-148676800	Weak transcription	Fetal Stomach	stomach
44	chr4:148675600-148677200	Weak transcription	Psoas Muscle	Psoas
45	chr4:148675600-148677200	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr4:148675600-148678000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr4:148675600-148679200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr4:148675600-148681200	Weak transcription	Pancreas	Pancrea
49	chr4:148675600-148681400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr4:148675600-148681600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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