Variant report

Variant	rs7684897
Chromosome Location	chr4:148661257-148661258
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:148660544..148662110-chr4:148679159..148680950,2	MCF-7	breast:
2	chr4:148655598..148657433-chr4:148661220..148663896,2	MCF-7	breast:
3	chr4:148655373..148657177-chr4:148661205..148664133,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17023732	1.00[EUR][1000 genomes]
rs1969102	0.82[ASN][1000 genomes]
rs2358097	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4379049	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4496566	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55706053	1.00[AMR][1000 genomes]
rs59081829	1.00[AMR][1000 genomes]
rs6849336	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7677034	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs905607	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv880242	chr4:148659137-148727355	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148655400-148662600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:148655400-148662600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr4:148655600-148662600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr4:148655600-148662800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:148655600-148681600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr4:148655800-148663400	Enhancers	Fetal Heart	heart
7	chr4:148655800-148665600	Weak transcription	Lung	lung
8	chr4:148656000-148662400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr4:148656600-148661800	Weak transcription	Fetal Lung	lung
10	chr4:148656600-148676800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr4:148656800-148662800	Weak transcription	Small Intestine	intestine
12	chr4:148656800-148675200	Weak transcription	Fetal Stomach	stomach
13	chr4:148657000-148663000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr4:148657000-148668600	Weak transcription	Gastric	stomach
15	chr4:148657400-148662800	Weak transcription	Esophagus	oesophagus
16	chr4:148657400-148668600	Weak transcription	Fetal Intestine Small	intestine
17	chr4:148657800-148662600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr4:148658000-148662200	Weak transcription	A549	lung
19	chr4:148658200-148661400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr4:148658200-148661400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr4:148658200-148661600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr4:148658200-148661800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr4:148658200-148662400	Weak transcription	HMEC	breast
24	chr4:148658200-148662600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr4:148658200-148662600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr4:148658200-148662600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr4:148658200-148663000	Weak transcription	HUVEC	blood vessel
28	chr4:148658200-148663200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr4:148658200-148665400	Weak transcription	Aorta	Aorta
30	chr4:148658200-148675000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr4:148658400-148662200	Weak transcription	NHEK	skin
32	chr4:148658800-148663200	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr4:148658800-148665400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr4:148659000-148662600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr4:148659000-148662800	Weak transcription	Right Atrium	heart
36	chr4:148659200-148661800	Weak transcription	NHLF	lung
37	chr4:148659200-148662600	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr4:148659200-148662600	Weak transcription	HSMMtube	muscle
39	chr4:148659200-148662600	Weak transcription	NH-A	brain
40	chr4:148659200-148662800	Weak transcription	Psoas Muscle	Psoas
41	chr4:148659200-148662800	Weak transcription	Right Ventricle	heart
42	chr4:148659200-148663000	Weak transcription	Adipose Nuclei	Adipose
43	chr4:148659200-148665200	Weak transcription	Fetal Muscle Leg	muscle
44	chr4:148659200-148668000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr4:148659400-148662000	Weak transcription	Stomach Smooth Muscle	stomach
46	chr4:148659400-148662600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr4:148659400-148662600	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr4:148659400-148662800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr4:148660000-148661800	Weak transcription	Colon Smooth Muscle	Colon
50	chr4:148660200-148662600	Weak transcription	Left Ventricle	heart

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