Variant report

Variant	rs6849336
Chromosome Location	chr4:148665437-148665438
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:148651355..148654142-chr4:148663991..148665938,2	MCF-7	breast:
2	chr4:148655157..148657016-chr4:148664536..148666375,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000071205	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17023732	1.00[EUR][1000 genomes]
rs2358097	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4379049	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4496566	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55706053	1.00[AMR][1000 genomes]
rs59081829	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7677034	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7684897	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs905607	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv880242	chr4:148659137-148727355	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148655600-148681600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:148655800-148665600	Weak transcription	Lung	lung
3	chr4:148656600-148676800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr4:148656800-148675200	Weak transcription	Fetal Stomach	stomach
5	chr4:148657000-148668600	Weak transcription	Gastric	stomach
6	chr4:148657400-148668600	Weak transcription	Fetal Intestine Small	intestine
7	chr4:148658200-148675000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:148659200-148668000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:148660800-148668200	Weak transcription	Fetal Intestine Large	intestine
10	chr4:148663000-148675200	Weak transcription	Fetal Lung	lung
11	chr4:148663200-148670800	Weak transcription	A549	lung
12	chr4:148663200-148674400	Weak transcription	NHLF	lung
13	chr4:148663200-148675200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr4:148663200-148675200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr4:148663200-148675200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:148663400-148665600	Weak transcription	Ovary	ovary
17	chr4:148663400-148665600	Weak transcription	Psoas Muscle	Psoas
18	chr4:148663400-148667800	Weak transcription	GM12878-XiMat	blood
19	chr4:148663400-148668000	Weak transcription	Fetal Heart	heart
20	chr4:148663400-148668200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr4:148663400-148668200	Weak transcription	HSMMtube	muscle
22	chr4:148663400-148668600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr4:148663400-148668600	Weak transcription	Adipose Nuclei	Adipose
24	chr4:148663400-148668600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr4:148663400-148668600	Weak transcription	NHEK	skin
26	chr4:148663400-148669000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr4:148663400-148670800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr4:148663400-148670800	Weak transcription	NH-A	brain
29	chr4:148663400-148674600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr4:148663400-148674600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr4:148663400-148674800	Weak transcription	HUVEC	blood vessel
32	chr4:148663400-148675000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr4:148663400-148675000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr4:148663400-148675000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr4:148663400-148675000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr4:148663400-148675000	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr4:148663600-148666000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr4:148663600-148666200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr4:148663600-148674200	Weak transcription	Osteobl	bone
40	chr4:148663600-148674800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr4:148663600-148675200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr4:148663600-148688800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr4:148664000-148666400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr4:148664000-148668600	Weak transcription	HSMM	muscle
45	chr4:148664000-148669800	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr4:148664000-148674200	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr4:148664600-148665600	Enhancers	Stomach Smooth Muscle	stomach
48	chr4:148664600-148665800	Weak transcription	Colon Smooth Muscle	Colon
49	chr4:148664600-148667800	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr4:148664600-148682200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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