Variant report

Variant	rs59082266
Chromosome Location	chr6:37476404-37476405
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37463837..37466464-chr6:37476098..37478071,3	K562	blood:
2	chr6:37475829..37477406-chr6:37481172..37483865,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11963196	1.00[EUR][1000 genomes]
rs57024179	1.00[EUR][1000 genomes]
rs57234413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61241984	1.00[EUR][1000 genomes]
rs6457987	1.00[EUR][1000 genomes]
rs6457988	1.00[EUR][1000 genomes]
rs6905666	1.00[EUR][1000 genomes]
rs6913348	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6925634	1.00[EUR][1000 genomes]
rs6925640	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1016310	chr6:37473075-37528469	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	esv3345484	chr6:37474399-37476947	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37468000-37477200	Enhancers	Primary T cells fromperipheralblood	blood
2	chr6:37468000-37483600	Enhancers	Fetal Thymus	thymus
3	chr6:37470600-37477000	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr6:37471200-37477800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:37471200-37483600	Weak transcription	Spleen	Spleen
6	chr6:37473800-37482200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:37474400-37477000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:37474600-37476800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr6:37474800-37477400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:37475800-37476600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:37475800-37476800	Enhancers	GM12878-XiMat	blood
12	chr6:37475800-37479400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:37476000-37476600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:37476000-37476600	Enhancers	Dnd41	blood
15	chr6:37476200-37476600	Enhancers	HepG2	liver
16	chr6:37476200-37476800	Enhancers	Primary T cells from cord blood	blood
17	chr6:37476200-37477000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:37476200-37477400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr6:37476200-37478600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:37476200-37483600	Enhancers	Thymus	Thymus
21	chr6:37476400-37476600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
22	chr6:37476400-37476800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:37476400-37477000	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr6:37476400-37477000	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr6:37476400-37477600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr6:37476400-37481200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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