Variant report

Variant	rs6925634
Chromosome Location	chr6:37406227-37406228
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37393178..37396451-chr6:37404709..37407721,4	K562	blood:
2	chr6:37398080..37402118-chr6:37406158..37410908,4	MCF-7	breast:
3	chr6:37405964..37408218-chr6:37409386..37411340,2	K562	blood:
4	chr6:37405566..37407359-chr6:37414898..37416616,2	K562	blood:
5	chr6:37405263..37407769-chr6:37419660..37421781,2	K562	blood:
6	chr6:37405566..37410075-chr6:37411799..37416398,4	K562	blood:

Variant related genes	Relation type
ENSG00000137200	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11963196	0.90[YRI][hapmap];1.00[EUR][1000 genomes]
rs35867476	1.00[EUR][1000 genomes]
rs57024179	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57234413	1.00[EUR][1000 genomes]
rs59082266	1.00[EUR][1000 genomes]
rs61241984	1.00[EUR][1000 genomes]
rs6457987	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6457988	1.00[EUR][1000 genomes]
rs6905666	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6913348	1.00[EUR][1000 genomes]
rs6925640	0.85[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73417847	1.00[EUR][1000 genomes]
rs7767313	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37401800-37414000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:37402200-37408000	Weak transcription	A549	lung
3	chr6:37402200-37408600	Weak transcription	Aorta	Aorta
4	chr6:37402200-37414000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:37402200-37417800	Weak transcription	Small Intestine	intestine
6	chr6:37402200-37427800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:37402400-37406600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:37402400-37406600	Weak transcription	HUVEC	blood vessel
9	chr6:37402400-37408000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:37402400-37410200	Weak transcription	Right Atrium	heart
11	chr6:37402400-37411800	Weak transcription	Fetal Heart	heart
12	chr6:37402400-37413600	Weak transcription	HMEC	breast
13	chr6:37402800-37411800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:37403000-37409600	Strong transcription	Fetal Intestine Small	intestine
15	chr6:37403000-37434400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr6:37403200-37406400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:37403200-37406600	Strong transcription	Fetal Lung	lung
18	chr6:37403200-37407200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr6:37403200-37407800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:37403200-37408200	Strong transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:37403200-37409000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:37403200-37409800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr6:37403200-37410000	Strong transcription	Fetal Muscle Trunk	muscle
24	chr6:37403200-37410200	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr6:37403200-37410800	Strong transcription	Primary B cells from cord blood	blood
26	chr6:37403200-37410800	Strong transcription	Fetal Muscle Leg	muscle
27	chr6:37403200-37418400	Strong transcription	Fetal Stomach	stomach
28	chr6:37403200-37422000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:37403200-37423800	Strong transcription	Fetal Thymus	thymus
30	chr6:37403200-37432000	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr6:37403200-37432600	Strong transcription	Placenta	Placenta
32	chr6:37403200-37433200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr6:37403400-37406400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr6:37403400-37407000	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr6:37403400-37407600	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr6:37403400-37407600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr6:37403400-37408200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:37403400-37408200	Strong transcription	Skeletal Muscle Male	skeletal muscle
39	chr6:37403400-37408400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr6:37403400-37408400	Strong transcription	Adipose Nuclei	Adipose
41	chr6:37403400-37409000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:37403400-37409200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr6:37403400-37409400	Strong transcription	Fetal Intestine Large	intestine
44	chr6:37403400-37409800	Strong transcription	Primary B cells from peripheral blood	blood
45	chr6:37403400-37410200	Strong transcription	Primary T cells from cord blood	blood
46	chr6:37403400-37422000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:37403400-37423800	Strong transcription	K562	blood
48	chr6:37403400-37432000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:37403600-37406400	Strong transcription	Lung	lung
50	chr6:37403600-37406600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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