Variant report

Variant	rs59087318
Chromosome Location	chr5:126055413-126055414
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:126053625..126056164-chr5:126056788..126059180,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs56893573	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57813213	1.00[AMR][1000 genomes]
rs61089732	1.00[AMR][1000 genomes]
rs61548555	1.00[AMR][1000 genomes]
rs61661009	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73333414	1.00[AMR][1000 genomes]
rs73333419	1.00[AMR][1000 genomes]
rs73333420	1.00[AMR][1000 genomes]
rs73333425	1.00[AMR][1000 genomes]
rs73333427	1.00[AMR][1000 genomes]
rs73333429	1.00[AMR][1000 genomes]
rs73333434	1.00[AMR][1000 genomes]
rs73333442	1.00[AMR][1000 genomes]
rs73333443	1.00[AMR][1000 genomes]
rs73333449	1.00[AMR][1000 genomes]
rs73333453	1.00[AMR][1000 genomes]
rs73333456	1.00[AMR][1000 genomes]
rs73333460	1.00[AMR][1000 genomes]
rs73333464	1.00[AMR][1000 genomes]
rs73333466	1.00[AMR][1000 genomes]
rs73333497	1.00[AMR][1000 genomes]
rs7731899	1.00[AMR][1000 genomes]
rs7731916	1.00[AMR][1000 genomes]
rs7732208	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949054	chr5:125918148-126254480	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv462442	chr5:125921768-126089190	Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv599662	chr5:125921768-126089190	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv534292	chr5:125993451-126259315	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126052200-126056800	Weak transcription	Right Atrium	heart
2	chr5:126054400-126058000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:126054600-126056600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:126054800-126055800	Weak transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links