Variant report

Variant	rs73333425
Chromosome Location	chr5:126099308-126099309
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs56893573	1.00[AMR][1000 genomes]
rs57813213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59087318	1.00[AMR][1000 genomes]
rs61089732	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61548555	1.00[AMR][1000 genomes]
rs61661009	1.00[AMR][1000 genomes]
rs73333414	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73333419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73333420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73333427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73333429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73333434	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73333442	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73333443	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73333449	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73333453	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73333456	1.00[AMR][1000 genomes]
rs73333460	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73333464	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73333466	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73333497	1.00[AMR][1000 genomes]
rs7731899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7731916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7732208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949054	chr5:125918148-126254480	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv534292	chr5:125993451-126259315	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126098400-126099400	Enhancers	GM12878-XiMat	blood
2	chr5:126098600-126099400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr5:126098800-126100200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:126098800-126102200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr5:126099000-126100200	Enhancers	Monocytes-CD14+_RO01746	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links