Variant report

Variant	rs59114654
Chromosome Location	chr2:10736591-10736592
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:10734697..10736595-chr2:10738391..10740909,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs2171771	1.00[AMR][1000 genomes]
rs56702784	1.00[AMR][1000 genomes]
rs56914795	1.00[AMR][1000 genomes]
rs57125237	1.00[AMR][1000 genomes]
rs57309175	1.00[AMR][1000 genomes]
rs57382387	1.00[AMR][1000 genomes]
rs57464659	1.00[AMR][1000 genomes]
rs57597544	1.00[AMR][1000 genomes]
rs58214362	1.00[AMR][1000 genomes]
rs58838965	1.00[AMR][1000 genomes]
rs58886768	1.00[AMR][1000 genomes]
rs59640725	1.00[AMR][1000 genomes]
rs60016454	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60286502	1.00[AMR][1000 genomes]
rs60384217	1.00[AMR][1000 genomes]
rs60489255	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61167760	1.00[AMR][1000 genomes]
rs6749287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73165980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73167824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73167845	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73167849	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73167864	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73167887	1.00[AMR][1000 genomes]
rs73167897	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73167901	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73169906	1.00[AMR][1000 genomes]
rs73169907	1.00[AMR][1000 genomes]
rs73169908	1.00[AMR][1000 genomes]
rs73169912	0.81[AFR][1000 genomes]
rs73169917	1.00[AMR][1000 genomes]
rs73169921	1.00[AMR][1000 genomes]
rs73169922	1.00[AMR][1000 genomes]
rs73169924	1.00[AMR][1000 genomes]
rs73169925	1.00[AMR][1000 genomes]
rs73169929	1.00[AMR][1000 genomes]
rs73169933	1.00[AMR][1000 genomes]
rs7587281	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7607468	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007185	chr2:10540386-10791743	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv833370	chr2:10625149-10785402	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1009897	chr2:10627248-10751468	Enhancers Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1000953	chr2:10717304-10921805	Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv535584	chr2:10717304-10921805	Bivalent Enhancer Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv833381	chr2:10723465-10911284	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10698600-10736600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:10709200-10746800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:10712600-10742000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr2:10719800-10746600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr2:10720000-10746400	Strong transcription	Dnd41	blood
6	chr2:10720400-10740200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:10720800-10739200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr2:10721000-10755000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr2:10721200-10746800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr2:10722000-10738200	Strong transcription	Fetal Muscle Leg	muscle
11	chr2:10722800-10741400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:10725600-10744000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:10725600-10758800	Weak transcription	Stomach Mucosa	stomach
14	chr2:10725600-10793400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr2:10725800-10787000	Weak transcription	Fetal Heart	heart
16	chr2:10726000-10738400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr2:10726000-10746200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr2:10726000-10747600	Strong transcription	HepG2	liver
19	chr2:10727600-10737000	Strong transcription	Fetal Intestine Small	intestine
20	chr2:10727600-10739400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr2:10727800-10740400	Strong transcription	Primary B cells from peripheral blood	blood
22	chr2:10728200-10737800	Weak transcription	NH-A	brain
23	chr2:10729200-10738000	Weak transcription	HMEC	breast
24	chr2:10729200-10741600	Weak transcription	Pancreas	Pancrea
25	chr2:10729200-10754200	Weak transcription	NHLF	lung
26	chr2:10729200-10760000	Weak transcription	Brain Angular Gyrus	brain
27	chr2:10729400-10736600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr2:10729400-10740800	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr2:10729400-10741600	Weak transcription	Right Ventricle	heart
30	chr2:10729400-10781800	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr2:10729400-10798400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr2:10729600-10738000	Weak transcription	Small Intestine	intestine
33	chr2:10729600-10741400	Weak transcription	Colonic Mucosa	Colon
34	chr2:10729600-10741400	Weak transcription	Spleen	Spleen
35	chr2:10729600-10742000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr2:10729800-10736600	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr2:10729800-10738000	Weak transcription	Fetal Kidney	kidney
38	chr2:10729800-10744800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr2:10730000-10747600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr2:10730800-10774400	Weak transcription	Psoas Muscle	Psoas
41	chr2:10731000-10741600	Weak transcription	Colon Smooth Muscle	Colon
42	chr2:10731000-10742000	Weak transcription	HSMMtube	muscle
43	chr2:10731200-10736800	Weak transcription	K562	blood
44	chr2:10731400-10752000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr2:10731600-10738000	Weak transcription	Osteobl	bone
46	chr2:10731800-10736600	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr2:10731800-10738600	Weak transcription	Brain Hippocampus Middle	brain
48	chr2:10732000-10736600	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr2:10732000-10736600	Weak transcription	Liver	Liver
50	chr2:10732000-10737600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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