Variant report

Variant	rs5913962
Chromosome Location	chrX:56601893-56601894
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:56593306..56595130-chrX:56601752..56604305,2	K562	blood:
2	chrX:56595142..56598529-chrX:56599430..56604121,4	K562	blood:
3	chrX:56589676..56592038-chrX:56599378..56602189,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188021	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1889850	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752678	chrX:55930768-56851953	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2753382	chrX:55930768-56851953	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2754448	chrX:55930768-56851953	ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2755974	chrX:55930768-56851953	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv432333	chrX:55930768-56851953	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	esv2756104	chrX:56292362-56824154	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	esv2754937	chrX:56482424-56851953	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:56592200-56602600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chrX:56592200-56625800	Weak transcription	Left Ventricle	heart
3	chrX:56592600-56613200	Weak transcription	Fetal Intestine Small	intestine
4	chrX:56593200-56603600	Weak transcription	HSMMtube	muscle
5	chrX:56593200-56625200	Weak transcription	Thymus	Thymus
6	chrX:56593800-56604400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chrX:56593800-56607000	Weak transcription	Primary T cells from cord blood	blood
8	chrX:56593800-56608400	Weak transcription	Duodenum Mucosa	Duodenum
9	chrX:56593800-56616200	Weak transcription	Primary B cells from cord blood	blood
10	chrX:56594200-56604200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chrX:56594600-56603600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chrX:56595600-56602800	Weak transcription	Stomach Mucosa	stomach
13	chrX:56595600-56617200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chrX:56595800-56604800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chrX:56595800-56604800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chrX:56595800-56605200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chrX:56596600-56605200	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chrX:56596600-56606200	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chrX:56596600-56606800	Weak transcription	Primary B cells from peripheral blood	blood
20	chrX:56596600-56608000	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chrX:56596600-56619400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chrX:56596800-56602400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chrX:56596800-56614600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chrX:56597000-56604200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chrX:56597000-56606800	Weak transcription	Hela-S3	cervix
26	chrX:56597000-56608200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chrX:56597000-56626200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chrX:56597400-56613200	Weak transcription	Primary T cells fromperipheralblood	blood
29	chrX:56597400-56623600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chrX:56597400-56627800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chrX:56597800-56614800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chrX:56598800-56603000	Weak transcription	Fetal Muscle Leg	muscle
33	chrX:56598800-56606800	Weak transcription	Dnd41	blood
34	chrX:56599800-56604400	Weak transcription	A549	lung
35	chrX:56599800-56605200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chrX:56599800-56606200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chrX:56599800-56606600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chrX:56599800-56625400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chrX:56600000-56614600	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chrX:56600800-56602800	Weak transcription	HSMM	muscle
41	chrX:56601200-56624000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chrX:56601400-56602400	Weak transcription	Primary T helper cells PMA-I stimulated	--

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