Variant report

Variant	rs59148261
Chromosome Location	chr6:73783164-73783165
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1935518	1.00[EUR][1000 genomes]
rs1935521	1.00[EUR][1000 genomes]
rs1935524	1.00[EUR][1000 genomes]
rs1935525	1.00[EUR][1000 genomes]
rs2796002	1.00[EUR][1000 genomes]
rs2796004	1.00[EUR][1000 genomes]
rs2995344	1.00[EUR][1000 genomes]
rs73753259	1.00[EUR][1000 genomes]
rs73753260	1.00[EUR][1000 genomes]
rs73753263	1.00[EUR][1000 genomes]
rs9446765	1.00[EUR][1000 genomes]
rs9446766	1.00[EUR][1000 genomes]
rs9446767	1.00[EUR][1000 genomes]
rs9446768	1.00[EUR][1000 genomes]
rs9446770	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73766000-73788400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:73766400-73786000	Weak transcription	Primary B cells from cord blood	blood
3	chr6:73766600-73805400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:73772200-73783600	Weak transcription	HSMM	muscle
5	chr6:73775000-73801800	Weak transcription	Primary T cells from cord blood	blood
6	chr6:73775200-73793800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:73778800-73790200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:73782200-73784800	Enhancers	A549	lung
9	chr6:73782800-73783200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:73782800-73784600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:73782800-73784600	Enhancers	Osteobl	bone
12	chr6:73783000-73783200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:73783000-73783800	Enhancers	NH-A	brain
14	chr6:73783000-73785600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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