Variant report

Variant	rs9446767
Chromosome Location	chr6:73557471-73557472
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs16882798	1.00[EUR][1000 genomes]
rs1935518	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1935521	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1935524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1935525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2179953	1.00[EUR][1000 genomes]
rs2796002	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2796004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2840798	1.00[AMR][1000 genomes]
rs2995344	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57695167	1.00[AMR][1000 genomes]
rs59148261	1.00[EUR][1000 genomes]
rs7743377	1.00[EUR][1000 genomes]
rs7770272	1.00[EUR][1000 genomes]
rs9442833	1.00[EUR][1000 genomes]
rs9442849	1.00[EUR][1000 genomes]
rs9442852	1.00[EUR][1000 genomes]
rs9442857	1.00[EUR][1000 genomes]
rs9446723	1.00[EUR][1000 genomes]
rs9446744	1.00[EUR][1000 genomes]
rs9446747	1.00[EUR][1000 genomes]
rs9446765	1.00[EUR][1000 genomes]
rs9446766	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446768	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv470834	chr6:73546750-73596605	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv886155	chr6:73551937-73649330	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73509200-73572200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73555000-73559000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:73556000-73558800	Weak transcription	Fetal Heart	heart
4	chr6:73556400-73560200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:73557200-73561400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links