Variant report

Variant	rs9442849
Chromosome Location	chr6:73506118-73506119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16882798	1.00[EUR][1000 genomes]
rs1935518	1.00[EUR][1000 genomes]
rs1935521	1.00[EUR][1000 genomes]
rs1935524	1.00[EUR][1000 genomes]
rs1935525	1.00[EUR][1000 genomes]
rs2179953	1.00[EUR][1000 genomes]
rs2796002	1.00[EUR][1000 genomes]
rs2796004	1.00[EUR][1000 genomes]
rs2995344	1.00[EUR][1000 genomes]
rs7743377	1.00[EUR][1000 genomes]
rs7770272	1.00[EUR][1000 genomes]
rs9442833	1.00[EUR][1000 genomes]
rs9442852	1.00[EUR][1000 genomes]
rs9442857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446723	1.00[EUR][1000 genomes]
rs9446744	1.00[EUR][1000 genomes]
rs9446747	1.00[EUR][1000 genomes]
rs9446765	1.00[EUR][1000 genomes]
rs9446766	1.00[EUR][1000 genomes]
rs9446767	1.00[EUR][1000 genomes]
rs9446768	1.00[EUR][1000 genomes]
rs9446770	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73479600-73507800	Weak transcription	Primary T cells from cord blood	blood
2	chr6:73489800-73507000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:73492600-73508000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:73494600-73508200	Weak transcription	Primary B cells from cord blood	blood
5	chr6:73498000-73507800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:73498200-73508000	Weak transcription	Osteobl	bone
7	chr6:73499200-73507800	Weak transcription	NHEK	skin
8	chr6:73501000-73517200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:73501200-73507800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:73501200-73508000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:73501800-73507600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:73506000-73506600	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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