Variant report

Variant	rs1935521
Chromosome Location	chr6:73573771-73573772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs16882798	1.00[EUR][1000 genomes]
rs1935518	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1935524	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1935525	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2179953	1.00[EUR][1000 genomes]
rs2796002	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2796004	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2840798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2995344	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57695167	1.00[AMR][1000 genomes]
rs59148261	1.00[EUR][1000 genomes]
rs7743377	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7770272	1.00[EUR][1000 genomes]
rs9442833	1.00[EUR][1000 genomes]
rs9442849	1.00[EUR][1000 genomes]
rs9442852	1.00[EUR][1000 genomes]
rs9442857	1.00[EUR][1000 genomes]
rs9446723	1.00[EUR][1000 genomes]
rs9446744	1.00[EUR][1000 genomes]
rs9446747	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9446765	1.00[EUR][1000 genomes]
rs9446766	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446767	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446768	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv470834	chr6:73546750-73596605	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv886155	chr6:73551937-73649330	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73569600-73575600	Enhancers	HSMMtube	muscle
2	chr6:73570400-73576600	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr6:73571000-73576200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:73571600-73574200	Enhancers	Psoas Muscle	Psoas
5	chr6:73572000-73573800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:73572000-73575400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:73572000-73590200	Weak transcription	GM12878-XiMat	blood
8	chr6:73572200-73575200	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr6:73572200-73576400	Enhancers	HSMM	muscle
10	chr6:73572400-73575000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr6:73572400-73576000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:73572600-73573800	Weak transcription	Aorta	Aorta
13	chr6:73572600-73574800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:73572600-73574800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:73572600-73575200	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr6:73572600-73575200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:73572600-73575200	Weak transcription	NHDF-Ad	bronchial
18	chr6:73572600-73583800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr6:73572800-73575400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:73573000-73574000	Weak transcription	HMEC	breast
21	chr6:73573000-73574800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr6:73573200-73574000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:73573200-73574800	Weak transcription	NHEK	skin
24	chr6:73573200-73575200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:73573200-73575400	Weak transcription	Osteobl	bone
26	chr6:73573400-73573800	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr6:73573600-73573800	Enhancers	Brain Substantia Nigra	brain
28	chr6:73573600-73574400	Enhancers	Liver	Liver

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