The 2.0 version of rSNPBase

Variant report

Variant rs59156578
Chromosome Location chr1:172582315-172582316
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172559000-172583400 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr1:172560000-172582400 Weak transcription Brain Substantia Nigra brain
3 chr1:172566600-172595800 Weak transcription Primary T helper naive cells from peripheral blood blood
4 chr1:172570600-172584000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
5 chr1:172570600-172585400 Weak transcription Aorta Aorta
6 chr1:172573400-172582400 Weak transcription Stomach Smooth Muscle stomach
7 chr1:172576800-172585400 Weak transcription Pancreatic Islets Pancreatic Islet
8 chr1:172578800-172582600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
9 chr1:172579400-172585400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr1:172579600-172585200 Weak transcription ES-I3 Cell Line embryonic stem cell
11 chr1:172579800-172582400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
12 chr1:172579800-172588600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
13 chr1:172580000-172583000 Weak transcription GM12878-XiMat blood
14 chr1:172580000-172583800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr1:172580000-172584200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
16 chr1:172580000-172584400 Weak transcription HSMMtube muscle
17 chr1:172580000-172585400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
18 chr1:172580200-172582400 Weak transcription Fetal Muscle Trunk muscle
19 chr1:172580200-172585000 Weak transcription Duodenum Mucosa Duodenum
20 chr1:172580200-172589800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
21 chr1:172580400-172582400 Weak transcription Rectal Mucosa Donor 29 rectum
22 chr1:172580400-172582800 Weak transcription H1 Cell Line embryonic stem cell
23 chr1:172580400-172584000 Weak transcription Dnd41 blood
24 chr1:172580600-172582400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr1:172580600-172582400 Weak transcription HSMM muscle
26 chr1:172580600-172582400 Weak transcription HUVEC blood vessel
27 chr1:172580600-172582600 Weak transcription Duodenum Smooth Muscle Duodenum
28 chr1:172580600-172582600 Weak transcription Fetal Brain Female brain
29 chr1:172580600-172583000 Weak transcription Liver Liver
30 chr1:172580600-172583000 Weak transcription HepG2 liver
31 chr1:172580600-172583600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr1:172580600-172585400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr1:172580800-172582400 Weak transcription Primary T helper naive cells fromperipheralblood blood
34 chr1:172580800-172582400 Weak transcription Cortex derived primary cultured neurospheres brain
35 chr1:172580800-172583200 Weak transcription Fetal Thymus thymus
36 chr1:172580800-172583600 Weak transcription Primary hematopoietic stem cells short term culture blood
37 chr1:172580800-172583600 Weak transcription Adipose Nuclei Adipose
38 chr1:172580800-172583800 Weak transcription HUES48 Cell Line embryonic stem cell
39 chr1:172580800-172583800 Weak transcription HUES6 Cell Line embryonic stem cell
40 chr1:172580800-172585000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
41 chr1:172580800-172585400 Weak transcription Placenta Placenta
42 chr1:172580800-172588800 Weak transcription NH-A brain
43 chr1:172581000-172582800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
44 chr1:172581000-172583400 Weak transcription HUES64 Cell Line embryonic stem cell
45 chr1:172581000-172583600 Weak transcription Primary hematopoietic stem cells blood
46 chr1:172581000-172583800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
47 chr1:172581000-172583800 Weak transcription Breast Myoepithelial Primary Cells Breast
48 chr1:172581000-172584000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
49 chr1:172581000-172584400 Weak transcription iPS-20b Cell Line embryonic stem cell
50 chr1:172581000-172585200 Weak transcription Primary neutrophils fromperipheralblood blood

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Last update: Aug 31, 2015