Variant report

Variant	rs73032201
Chromosome Location	chr1:172516959-172516960
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172511128..172513343-chr1:172514678..172516974,2	K562	blood:
2	chr1:172500260..172503470-chr1:172516553..172520247,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs58097538	0.81[AFR][1000 genomes]
rs59156578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61692965	0.81[AFR][1000 genomes]
rs73034011	0.81[AFR][1000 genomes]
rs73034032	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73034041	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73034042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7518180	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872547	chr1:172511969-172545832	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172503400-172528600	Weak transcription	Aorta	Aorta
2	chr1:172503400-172528600	Weak transcription	Lung	lung
3	chr1:172503600-172520200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr1:172503600-172531600	Weak transcription	Esophagus	oesophagus
5	chr1:172503800-172529000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr1:172503800-172534200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr1:172504000-172524400	Weak transcription	HSMM	muscle
8	chr1:172504200-172527000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr1:172504400-172519400	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr1:172505200-172518800	Weak transcription	Brain Angular Gyrus	brain
11	chr1:172505800-172519600	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr1:172506000-172519000	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr1:172506000-172532600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr1:172506200-172525000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr1:172506200-172526200	Weak transcription	Fetal Intestine Large	intestine
16	chr1:172506200-172528400	Weak transcription	Fetal Stomach	stomach
17	chr1:172507200-172518400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr1:172507400-172517600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr1:172507400-172518400	Weak transcription	NHEK	skin
20	chr1:172507400-172523000	Weak transcription	NHDF-Ad	bronchial
21	chr1:172507400-172526400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr1:172507400-172528600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:172508000-172517400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr1:172508200-172519200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:172508200-172526400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr1:172509400-172530800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr1:172510000-172518200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr1:172510000-172524000	Weak transcription	Dnd41	blood
29	chr1:172510000-172525000	Weak transcription	Left Ventricle	heart
30	chr1:172511800-172524800	Weak transcription	Liver	Liver
31	chr1:172511800-172528600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr1:172511800-172557800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr1:172512000-172518400	Weak transcription	Brain Substantia Nigra	brain
34	chr1:172512000-172523400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr1:172512000-172529000	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr1:172512000-172534200	Weak transcription	Gastric	stomach
37	chr1:172512200-172519000	Weak transcription	Brain Anterior Caudate	brain
38	chr1:172512400-172524200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr1:172513000-172517600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr1:172513400-172518400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr1:172513400-172518400	Weak transcription	HepG2	liver
42	chr1:172513600-172517800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr1:172513600-172524600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr1:172513800-172517400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr1:172513800-172525000	Weak transcription	Fetal Thymus	thymus
46	chr1:172514200-172558800	Weak transcription	Small Intestine	intestine
47	chr1:172514400-172517600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr1:172514400-172526200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr1:172514600-172519000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr1:172514600-172524200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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