Variant report

Variant	rs59162154
Chromosome Location	chr8:61546280-61546281
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61544364..61547029-chr8:61547472..61549189,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CA8-5	chr8:61545620-61548830	ENSG00000228862

Variant related genes	Relation type
ENSG00000228862	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1384687	0.89[EUR][1000 genomes]
rs16926270	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16926284	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16926294	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16926324	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16926354	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16926358	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1893273	0.84[ASN][1000 genomes]
rs1941462	0.83[ASN][1000 genomes]
rs2007283	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2178953	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3735827	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55761966	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55837608	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55841758	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56030634	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56123131	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56141796	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56160504	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56165842	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56192263	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56332284	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56342714	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57550331	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58183709	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59861870	0.84[ASN][1000 genomes]
rs60012828	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60369157	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61120651	0.84[ASN][1000 genomes]
rs6471892	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6980590	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7016685	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs714207	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72648576	0.84[ASN][1000 genomes]
rs72648589	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72648590	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72648594	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72648597	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72648602	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72650405	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72650416	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72650417	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72650422	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72650425	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7817790	0.84[ASN][1000 genomes]
rs7825009	0.81[ASN][1000 genomes]
rs7845982	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv530383	chr8:61431756-61605551	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv831335	chr8:61497540-61688992	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv890945	chr8:61522008-61707725	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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