Variant report

Variant	rs6471892
Chromosome Location	chr8:61545636-61545637
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61544364..61547029-chr8:61547472..61549189,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CA8-5	chr8:61545620-61548830	ENSG00000228862
2	lnc-CA8-5	chr8:61545627-61545676	NONHSAT126843

Variant related genes	Relation type
ENSG00000228862	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1384687	0.94[CEU][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16926270	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16926284	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16926294	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16926324	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16926354	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16926358	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1893273	0.86[ASN][1000 genomes]
rs1941462	0.85[ASN][1000 genomes]
rs2007283	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.91[LWK][hapmap];0.92[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2178953	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3735827	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55761966	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55831959	0.80[ASN][1000 genomes]
rs55837608	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55841758	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56030634	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56123131	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56141796	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56160504	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56165842	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56192263	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56332284	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56342714	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57550331	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58183709	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59162154	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59861870	0.86[ASN][1000 genomes]
rs60012828	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60369157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61120651	0.86[ASN][1000 genomes]
rs6980590	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7016685	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[TSI][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs714207	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72648576	0.86[ASN][1000 genomes]
rs72648589	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72648590	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72648594	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72648597	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72648602	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72650405	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72650416	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72650417	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72650422	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72650425	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7817790	0.86[ASN][1000 genomes]
rs7825009	0.83[ASN][1000 genomes]
rs7845982	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv530383	chr8:61431756-61605551	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv831335	chr8:61497540-61688992	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv890945	chr8:61522008-61707725	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61542800-61545800	Weak transcription	A549	lung
2	chr8:61545600-61546000	Active TSS	Hela-S3	cervix

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