Variant report

Variant	rs1941462
Chromosome Location	chr8:61406741-61406742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1351706	0.84[JPT][hapmap]
rs1384687	0.94[CEU][hapmap]
rs16918852	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs16926096	0.87[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs16926104	0.87[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs16926133	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16926137	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16926155	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16926208	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16926270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16926284	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16926294	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16926324	0.90[ASN][1000 genomes]
rs16926354	0.87[ASN][1000 genomes]
rs16926358	0.87[ASN][1000 genomes]
rs1893273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2007283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2178953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2186985	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3735827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55761966	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55831959	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55837608	0.90[ASN][1000 genomes]
rs55841758	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56030634	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56114656	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56123131	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56141796	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56160504	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56165842	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56192263	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56332284	0.90[ASN][1000 genomes]
rs56342714	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57297574	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57459725	0.85[EUR][1000 genomes]
rs57550331	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58183709	0.85[ASN][1000 genomes]
rs59162154	0.83[ASN][1000 genomes]
rs59861870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60012828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60183060	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60369157	0.85[ASN][1000 genomes]
rs60991551	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61120651	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6471892	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.85[ASN][1000 genomes]
rs6980590	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6981694	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6983084	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7016685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs714207	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72648528	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72648529	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72648531	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72648552	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72648553	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72648562	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72648567	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72648576	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72648589	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72648590	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72648594	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72648597	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72648602	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72650405	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72650416	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72650417	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72650422	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72650425	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7817790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7825009	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7825055	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7829407	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7830976	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7845982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs922611	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv971314	chr8:61359401-61436209	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61405400-61415200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:61406000-61406800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:61406000-61407600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:61406200-61406800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr8:61406400-61406800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
6	chr8:61406600-61406800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:61406600-61406800	ZNF genes & repeats	Liver	Liver

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