Variant report

Variant	rs7829407
Chromosome Location	chr8:61369006-61369007
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61357506..61359309-chr8:61366924..61369174,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1351706	0.84[JPT][hapmap]
rs1384687	0.94[CEU][hapmap]
rs16918852	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16926096	0.87[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16926104	0.87[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs16926111	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16926133	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926137	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926155	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1893273	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1941462	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1989747	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1989748	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2007283	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2178953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2186985	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3735827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs55761966	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55831959	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55841758	0.82[ASN][1000 genomes]
rs56030634	0.82[ASN][1000 genomes]
rs56114656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56141796	0.82[ASN][1000 genomes]
rs56160504	0.82[ASN][1000 genomes]
rs56165842	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56342714	0.82[ASN][1000 genomes]
rs57297574	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57459725	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59861870	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60012828	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60183060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60991551	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61120651	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6471892	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap]
rs6980590	0.82[ASN][1000 genomes]
rs6981694	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983084	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7016685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72648528	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72648529	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72648531	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72648552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72648553	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72648562	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72648567	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72648576	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72648589	0.81[ASN][1000 genomes]
rs7817790	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7825009	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7825055	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7830976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7845982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs922611	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv971314	chr8:61359401-61436209	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61366800-61369400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr8:61366800-61369400	Enhancers	HMEC	breast
3	chr8:61366800-61369600	Enhancers	NHEK	skin
4	chr8:61367000-61369600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:61367200-61369200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:61367400-61369200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:61367600-61369400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr8:61367800-61369600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:61367800-61369600	Enhancers	A549	lung
10	chr8:61368600-61371400	Weak transcription	NHLF	lung
11	chr8:61369000-61369400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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