Variant report

Variant	rs16926096
Chromosome Location	chr8:61288497-61288498
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:61287951..61290172-chr8:61291680..61294053,2	K562	blood:
2	chr8:61191853..61195079-chr8:61287519..61291871,6	K562	blood:
3	chr8:61191872..61194078-chr8:61288420..61290358,3	K562	blood:
4	chr8:61281417..61283995-chr8:61287741..61289563,2	K562	blood:

Variant related genes	Relation type
ENSG00000178538	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs16918852	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16926104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16926111	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16926133	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16926137	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16926155	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16926208	0.81[ASN][1000 genomes]
rs16926270	0.87[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1989747	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1989748	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2007283	0.87[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2178953	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2186985	0.81[ASN][1000 genomes]
rs57297574	0.81[ASN][1000 genomes]
rs57459725	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6981694	0.87[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6983084	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7016685	0.87[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs72648528	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72648529	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72648531	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7829407	0.81[ASN][1000 genomes]
rs922611	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1022752	chr8:61095248-61322302	Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3371465	chr8:61115030-61356658	Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv831334	chr8:61148796-61330190	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv890944	chr8:61252500-61307115	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61282800-61289200	Weak transcription	K562	blood
2	chr8:61284400-61293600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:61285600-61289400	Enhancers	Primary hematopoietic stem cells	blood
4	chr8:61287000-61288800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr8:61287000-61289000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:61287000-61292600	Weak transcription	Spleen	Spleen
7	chr8:61287200-61289000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr8:61287200-61289000	Weak transcription	Fetal Thymus	thymus
9	chr8:61287400-61289000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr8:61287400-61289000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr8:61287400-61289800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr8:61287600-61288600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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