Variant report

Variant	rs16926155
Chromosome Location	chr8:61330816-61330817
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:61330649-61331007	K562	blood:	n/a	n/a
2	TCF7L2	chr8:61330705-61331139	PANC-1	pancreas:	n/a	chr8:61330941-61330957 chr8:61330945-61330954
3	TCF7L2	chr8:61330750-61331126	HEK293	kidney:	n/a	chr8:61330941-61330957 chr8:61330945-61330954

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61325999..61328203-chr8:61328768..61330939,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251396	TF binding region
ENSG00000251396	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs16918852	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16926096	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16926104	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16926111	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16926133	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926137	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926208	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926270	0.82[ASN][1000 genomes]
rs1893273	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1941462	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1989747	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1989748	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2186985	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55761966	0.82[ASN][1000 genomes]
rs55831959	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55841758	0.82[ASN][1000 genomes]
rs56030634	0.82[ASN][1000 genomes]
rs56114656	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56141796	0.82[ASN][1000 genomes]
rs56160504	0.82[ASN][1000 genomes]
rs56165842	0.82[ASN][1000 genomes]
rs56342714	0.82[ASN][1000 genomes]
rs57297574	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57459725	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59861870	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60012828	0.82[ASN][1000 genomes]
rs60183060	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60991551	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61120651	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6980590	0.82[ASN][1000 genomes]
rs6981694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983084	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7016685	0.82[ASN][1000 genomes]
rs72648528	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72648529	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72648531	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72648552	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72648553	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72648562	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72648567	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72648576	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72648589	0.81[ASN][1000 genomes]
rs7817790	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7825009	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7825055	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7829407	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7830976	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs922611	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	esv3371465	chr8:61115030-61356658	Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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