Variant report

Variant	rs57297574
Chromosome Location	chr8:61357328-61357329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs16918852	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16926096	0.81[ASN][1000 genomes]
rs16926104	0.82[ASN][1000 genomes]
rs16926111	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16926133	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926137	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926155	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926208	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16926270	0.82[ASN][1000 genomes]
rs1893273	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1941462	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1989747	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1989748	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2186985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55761966	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55831959	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55841758	0.82[ASN][1000 genomes]
rs56030634	0.82[ASN][1000 genomes]
rs56114656	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56141796	0.82[ASN][1000 genomes]
rs56160504	0.82[ASN][1000 genomes]
rs56165842	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56342714	0.82[ASN][1000 genomes]
rs57459725	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59861870	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60012828	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60183060	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60991551	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61120651	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6980590	0.82[ASN][1000 genomes]
rs6981694	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983084	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7016685	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72648528	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72648529	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72648531	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72648552	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72648553	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72648562	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72648567	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72648576	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72648589	0.81[ASN][1000 genomes]
rs7817790	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7825009	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7825055	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7829407	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7830976	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs922611	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61357200-61357600	Active TSS	HUES6 Cell Line	embryonic stem cell

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