Variant report

Variant	rs59207214
Chromosome Location	chr1:172263220-172263221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16843882	1.00[AMR][1000 genomes]
rs16844215	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55690470	1.00[AMR][1000 genomes]
rs56109092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56189708	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56239164	1.00[AMR][1000 genomes]
rs56401358	1.00[AMR][1000 genomes]
rs57282950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58479172	1.00[AMR][1000 genomes]
rs74124045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7541934	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006542	chr1:172253765-172304690	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172256200-172267400	Weak transcription	Left Ventricle	heart
2	chr1:172256200-172267400	Weak transcription	Psoas Muscle	Psoas
3	chr1:172256200-172290000	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:172256400-172290200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:172256600-172265200	Weak transcription	NH-A	brain
6	chr1:172256600-172289800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr1:172257600-172267400	Weak transcription	Pancreas	Pancrea
8	chr1:172260600-172271000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:172261800-172263400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:172261800-172264000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:172262000-172263400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:172262000-172263800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:172263000-172267400	Weak transcription	Fetal Intestine Small	intestine
14	chr1:172263200-172267400	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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