Variant report

Variant	rs74124045
Chromosome Location	chr1:172278703-172278704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16843882	1.00[AMR][1000 genomes]
rs16844215	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55690470	1.00[AMR][1000 genomes]
rs56109092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56189708	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56239164	1.00[AMR][1000 genomes]
rs56401358	1.00[AMR][1000 genomes]
rs57282950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58479172	1.00[AMR][1000 genomes]
rs59207214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7541934	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006542	chr1:172253765-172304690	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172256200-172290000	Weak transcription	Brain Hippocampus Middle	brain
2	chr1:172256400-172290200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:172256600-172289800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr1:172272600-172291600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:172275200-172309800	Weak transcription	Left Ventricle	heart
6	chr1:172277400-172278800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:172277400-172279000	Enhancers	Fetal Kidney	kidney
8	chr1:172277400-172279200	Enhancers	Fetal Lung	lung
9	chr1:172277400-172279200	Enhancers	Fetal Stomach	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links