Variant report
| Variant | rs59210723 |
|---|---|
| Chromosome Location | chr21:16544670-16544671 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr21:16434158..16440207-chr21:16535498..16546791,27 | MCF-7 | breast: | |
| 2 | chr21:16543823..16545720-chr21:16570709..16572635,2 | MCF-7 | breast: | |
| 3 | chr21:16543825..16546494-chr21:16577749..16579512,2 | MCF-7 | breast: | |
| 4 | chr21:16493234..16497215-chr21:16543613..16545905,3 | MCF-7 | breast: | |
| 5 | chr21:16543363..16545459-chr21:16581109..16583907,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000180530 | Chromatin interaction |
| ENSG00000236471 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs1009576 | 0.97[EUR][1000 genomes] |
| rs11908720 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs17002267 | 0.89[AFR][1000 genomes] |
| rs2254223 | 0.86[EUR][1000 genomes] |
| rs2823103 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2823104 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2823105 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2823109 | 0.94[EUR][1000 genomes] |
| rs2823114 | 0.98[EUR][1000 genomes] |
| rs58228216 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs59949852 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7279147 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9974170 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9976384 | 0.97[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1063385 | chr21:16521617-16926212 | Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv913413 | chr21:16537728-16621859 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr21:16537400-16546000 | Weak transcription | Pancreas | Pancrea |
