Variant report

Variant	rs2254223
Chromosome Location	chr21:16520901-16520902
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1009576	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs10482866	0.81[ASN][1000 genomes]
rs11908720	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2403880	0.81[ASN][1000 genomes]
rs2823094	0.93[ASN][1000 genomes]
rs2823103	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2823104	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2823105	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2823109	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs2823114	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs58228216	0.87[EUR][1000 genomes]
rs59210723	0.86[EUR][1000 genomes]
rs59949852	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7279147	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9974170	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9974747	0.80[ASN][1000 genomes]
rs9974832	0.80[ASN][1000 genomes]
rs9976384	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs9979508	0.83[CHB][hapmap];0.82[ASN][1000 genomes]
rs9983032	0.93[ASN][1000 genomes]
rs9984213	0.93[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16513000-16521600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr21:16514600-16529600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr21:16516800-16521800	Weak transcription	Liver	Liver
4	chr21:16517200-16526800	Weak transcription	Pancreas	Pancrea
5	chr21:16520000-16521000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr21:16520800-16521400	Enhancers	Adipose Nuclei	Adipose
7	chr21:16520800-16522000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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