Variant report

Variant	rs2823104
Chromosome Location	chr21:16529910-16529911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1009576	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11908720	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2254223	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2823103	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823105	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2823107	0.83[JPT][hapmap];0.80[YRI][hapmap]
rs2823109	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2823114	0.88[EUR][1000 genomes]
rs58228216	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59210723	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59949852	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7279147	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9974170	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9975709	0.85[AFR][1000 genomes]
rs9976384	1.00[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16528000-16536600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr21:16528200-16530400	Weak transcription	Pancreas	Pancrea
3	chr21:16528200-16536800	Weak transcription	Fetal Heart	heart
4	chr21:16528800-16531600	Weak transcription	Fetal Intestine Large	intestine
5	chr21:16529600-16530000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr21:16529600-16530400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
7	chr21:16529600-16531000	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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