Variant report

Variant	rs9975709
Chromosome Location	chr21:16533640-16533641
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11088299	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2223128	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2823097	0.96[CEU][hapmap]
rs2823104	0.85[AFR][1000 genomes]
rs2823105	0.92[JPT][hapmap]
rs2823107	0.89[CHB][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823118	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2823121	0.84[CEU][hapmap]
rs59949852	0.84[AFR][1000 genomes]
rs7275529	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7279893	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7282135	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs965098	0.83[CEU][hapmap]
rs9974193	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16528000-16536600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr21:16528200-16536800	Weak transcription	Fetal Heart	heart
3	chr21:16530000-16535400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr21:16532200-16535000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr21:16532200-16536600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr21:16532600-16535600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr21:16533000-16536800	Weak transcription	Stomach Mucosa	stomach
8	chr21:16533400-16536600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr21:16533600-16534000	Weak transcription	Pancreas	Pancrea
10	chr21:16533600-16537000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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