Variant report

Variant	rs7282135
Chromosome Location	chr21:16541185-16541186
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1009576	0.85[ASN][1000 genomes]
rs1014526	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11088299	0.96[EUR][1000 genomes]
rs2223128	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2823107	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2823109	0.81[ASN][1000 genomes]
rs2823114	0.84[ASN][1000 genomes]
rs2823118	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2823121	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2823124	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7275529	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7279893	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs965098	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9974193	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9975709	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9976384	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv913413	chr21:16537728-16621859	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16537400-16546000	Weak transcription	Pancreas	Pancrea
2	chr21:16537800-16542600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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