Variant report

Variant	rs7279893
Chromosome Location	chr21:16545528-16545529
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:33)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:33 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr21:16504804..16505761-chr21:16545069..16546286,8	MCF-7	breast:
2	chr21:16545419..16546002-chr21:16714667..16715382,2	MCF-7	breast:
3	chr21:16545306..16546015-chr21:16582395..16583044,2	MCF-7	breast:
4	chr21:16375440..16376325-chr21:16545085..16545968,7	MCF-7	breast:
5	chr21:16545090..16545903-chr21:16564214..16564994,2	MCF-7	breast:
6	chr21:16545079..16546143-chr21:16581995..16583288,32	MCF-7	breast:
7	chr21:16375585..16376325-chr21:16545085..16545933,2	MCF-7	breast:
8	chr21:16434158..16440207-chr21:16535498..16546791,27	MCF-7	breast:
9	chr21:16543823..16545720-chr21:16570709..16572635,2	MCF-7	breast:
10	chr21:16545087..16546235-chr21:16571540..16572822,5	MCF-7	breast:
11	chr21:16545028..16546143-chr21:16581995..16583350,24	MCF-7	breast:
12	chr21:16545227..16545859-chr21:16572042..16572900,4	MCF-7	breast:
13	chr21:16545250..16545974-chr21:16576077..16576759,3	MCF-7	breast:
14	chr21:16504811..16505357-chr21:16544985..16545664,3	MCF-7	breast:
15	chr21:16377344..16378311-chr21:16545010..16546065,7	MCF-7	breast:
16	chr21:16545273..16546244-chr21:16571963..16572719,3	MCF-7	breast:
17	chr21:16545099..16546010-chr21:16571990..16572580,5	MCF-7	breast:
18	chr21:16377421..16378235-chr21:16545003..16546153,5	MCF-7	breast:
19	chr21:16543825..16546494-chr21:16577749..16579512,2	MCF-7	breast:
20	chr21:16545039..16545630-chr21:16816325..16817187,2	MCF-7	breast:
21	chr21:16545130..16546031-chr21:16816305..16817187,2	MCF-7	breast:
22	chr21:16493234..16497215-chr21:16543613..16545905,3	MCF-7	breast:
23	chr21:16235563..16236288-chr21:16545399..16545949,2	MCF-7	breast:
24	chr21:16504838..16505677-chr21:16545069..16545649,2	MCF-7	breast:
25	chr21:16545107..16545924-chr21:16958930..16959783,5	MCF-7	breast:
26	chr21:16545350..16545973-chr21:16571500..16572040,2	MCF-7	breast:
27	chr21:16545107..16545912-chr21:16958930..16959648,3	MCF-7	breast:
28	chr21:16545419..16546006-chr21:16714667..16715382,3	MCF-7	breast:
29	chr21:16545059..16545679-chr21:16959234..16959876,3	MCF-7	breast:
30	chr21:16437425..16437973-chr21:16545153..16545668,2	MCF-7	breast:
31	chr21:16544983..16547085-chr21:16581063..16583747,4	MCF-7	breast:
32	chr21:16545040..16546076-chr21:16582206..16583228,5	MCF-7	breast:
33	chr21:16377238..16378235-chr21:16544902..16545602,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000180530	Chromatin interaction
ENSG00000236471	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1009576	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1014526	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11088299	0.96[EUR][1000 genomes]
rs2223128	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2823097	0.96[CEU][hapmap]
rs2823107	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2823109	0.91[JPT][hapmap]
rs2823114	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs2823118	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823121	0.84[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2823124	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7275196	0.91[JPT][hapmap]
rs7275529	0.87[EUR][1000 genomes]
rs7282135	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs965098	0.83[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9974193	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9975709	0.93[EUR][1000 genomes]
rs9976384	0.95[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv913413	chr21:16537728-16621859	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16537400-16546000	Weak transcription	Pancreas	Pancrea
2	chr21:16545000-16546200	Enhancers	HepG2	liver
3	chr21:16545400-16546000	Enhancers	Fetal Intestine Small	intestine
4	chr21:16545400-16546200	Enhancers	Fetal Intestine Large	intestine

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