Variant report

Variant	rs9974193
Chromosome Location	chr21:16529033-16529034
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1009576	0.82[JPT][hapmap]
rs11088299	0.96[EUR][1000 genomes]
rs2223128	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2256038	0.82[AFR][1000 genomes]
rs2823097	0.96[CEU][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes]
rs2823107	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2823109	0.87[JPT][hapmap];0.89[YRI][hapmap]
rs2823114	0.82[JPT][hapmap]
rs2823118	0.96[CEU][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2823121	0.84[CEU][hapmap]
rs7275529	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7279893	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7282135	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs965098	0.83[CEU][hapmap]
rs9975709	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9976384	0.82[JPT][hapmap];0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16514600-16529600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr21:16521400-16529600	Weak transcription	Adipose Nuclei	Adipose
3	chr21:16528000-16536600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr21:16528200-16529600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr21:16528200-16530400	Weak transcription	Pancreas	Pancrea
6	chr21:16528200-16536800	Weak transcription	Fetal Heart	heart
7	chr21:16528800-16531600	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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