Variant report

Variant	rs2223128
Chromosome Location	chr21:16542960-16542961
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1009576	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1014526	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11088299	0.96[EUR][1000 genomes]
rs2823097	0.96[CEU][hapmap];0.88[YRI][hapmap]
rs2823107	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2823109	0.95[JPT][hapmap];0.89[YRI][hapmap]
rs2823114	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2823118	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2823121	0.84[CEU][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2823124	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7275196	0.91[JPT][hapmap]
rs7275529	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7279893	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7282135	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs965098	0.83[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9974193	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9975709	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9976384	1.00[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv913413	chr21:16537728-16621859	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16537400-16546000	Weak transcription	Pancreas	Pancrea
2	chr21:16542600-16543600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr21:16542800-16543200	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr21:16542800-16543600	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr21:16542800-16543600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr21:16542800-16544000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr21:16542800-16544000	Enhancers	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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