Variant report

Variant	rs9979508
Chromosome Location	chr21:16521617-16521618
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10482866	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2254223	0.82[ASN][1000 genomes]
rs2823094	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2823099	0.85[EUR][1000 genomes]
rs9974747	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9974832	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9977479	0.82[CEU][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes]
rs9984213	0.97[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16514600-16529600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr21:16516800-16521800	Weak transcription	Liver	Liver
3	chr21:16517200-16526800	Weak transcription	Pancreas	Pancrea
4	chr21:16520800-16522000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr21:16521400-16522000	Enhancers	Fetal Intestine Small	intestine
6	chr21:16521400-16522200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr21:16521400-16522200	Enhancers	Fetal Intestine Large	intestine
8	chr21:16521400-16529600	Weak transcription	Adipose Nuclei	Adipose
9	chr21:16521600-16522000	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr21:16521600-16525600	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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