Variant report

Variant	rs9977479
Chromosome Location	chr21:16524247-16524248
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10482866	0.82[CEU][hapmap];0.93[EUR][1000 genomes]
rs2823094	0.90[EUR][1000 genomes]
rs2823097	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2823099	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9974747	0.82[CEU][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs9974832	0.82[CEU][hapmap];0.93[EUR][1000 genomes]
rs9979508	0.82[CEU][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16514600-16529600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr21:16517200-16526800	Weak transcription	Pancreas	Pancrea
3	chr21:16521400-16529600	Weak transcription	Adipose Nuclei	Adipose
4	chr21:16521600-16525600	Enhancers	HepG2	liver
5	chr21:16521800-16524800	Enhancers	Liver	Liver
6	chr21:16523600-16524800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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