Variant report

Variant	rs59258663
Chromosome Location	chr4:99536589-99536590
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1919208	1.00[ASN][1000 genomes]
rs2141284	1.00[ASN][1000 genomes]
rs4699663	1.00[ASN][1000 genomes]
rs59951580	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60799211	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6822225	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6823791	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72908131	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99523000-99545000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:99527200-99541000	Weak transcription	NHLF	lung
3	chr4:99529200-99537800	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr4:99529400-99536600	Enhancers	Fetal Brain Male	brain
5	chr4:99529400-99539800	Enhancers	Brain Hippocampus Middle	brain
6	chr4:99529600-99542400	Enhancers	Brain Cingulate Gyrus	brain
7	chr4:99529600-99543200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr4:99529800-99538600	Weak transcription	Lung	lung
9	chr4:99530000-99540600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:99530400-99537400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:99530400-99538400	Weak transcription	HUVEC	blood vessel
12	chr4:99530800-99537400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr4:99531000-99538000	Enhancers	NH-A	brain
14	chr4:99531000-99538600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:99531000-99544200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr4:99531200-99536800	Enhancers	Fetal Heart	heart
17	chr4:99531200-99541400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr4:99531400-99538800	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr4:99532000-99538600	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr4:99532400-99538600	Weak transcription	Gastric	stomach
21	chr4:99532400-99538800	Weak transcription	Right Ventricle	heart
22	chr4:99532600-99545400	Weak transcription	HMEC	breast
23	chr4:99533600-99538600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr4:99534000-99537400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr4:99534000-99538600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr4:99534000-99538600	Weak transcription	Esophagus	oesophagus
27	chr4:99534000-99541400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr4:99534200-99537000	Weak transcription	Spleen	Spleen
29	chr4:99534200-99538600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr4:99534200-99538600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr4:99534200-99538600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr4:99534200-99541400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr4:99534400-99541200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr4:99534400-99543200	Weak transcription	Thymus	Thymus
35	chr4:99534600-99538600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr4:99534600-99538600	Weak transcription	Fetal Lung	lung
37	chr4:99534600-99541000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr4:99534800-99538800	Weak transcription	Brain Germinal Matrix	brain
39	chr4:99535000-99538800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr4:99535000-99541400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr4:99535000-99541600	Enhancers	Ovary	ovary
42	chr4:99535200-99538600	Weak transcription	Fetal Thymus	thymus
43	chr4:99535200-99538600	Weak transcription	HSMMtube	muscle
44	chr4:99535200-99541200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr4:99535400-99536800	Enhancers	Fetal Muscle Trunk	muscle
46	chr4:99535400-99539200	Enhancers	Fetal Muscle Leg	muscle
47	chr4:99535400-99540000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr4:99535400-99541000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr4:99535400-99544200	Weak transcription	NHEK	skin
50	chr4:99535600-99538400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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