Variant report

Variant	rs72908131
Chromosome Location	chr4:99531758-99531759
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:67709812..67710332-chr4:99531489..99532009,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1919208	1.00[ASN][1000 genomes]
rs2141284	1.00[ASN][1000 genomes]
rs4699663	1.00[ASN][1000 genomes]
rs59258663	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59951580	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60799211	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6822225	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6823791	0.82[EUR][1000 genomes]

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99522200-99532200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr4:99523000-99545000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:99523600-99532200	Weak transcription	HMEC	breast
4	chr4:99524000-99535400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:99525400-99533200	Weak transcription	Fetal Lung	lung
6	chr4:99527000-99531800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:99527200-99531800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr4:99527200-99532200	Weak transcription	Gastric	stomach
9	chr4:99527200-99534400	Weak transcription	Osteobl	bone
10	chr4:99527200-99541000	Weak transcription	NHLF	lung
11	chr4:99527400-99532000	Weak transcription	NHDF-Ad	bronchial
12	chr4:99528000-99534600	Enhancers	Fetal Thymus	thymus
13	chr4:99528200-99531800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:99529200-99532200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr4:99529200-99533000	Enhancers	Brain Germinal Matrix	brain
16	chr4:99529200-99533000	Enhancers	Fetal Brain Female	brain
17	chr4:99529200-99535400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr4:99529200-99535400	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr4:99529200-99537800	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr4:99529400-99531800	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr4:99529400-99531800	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr4:99529400-99535000	Enhancers	Brain Substantia Nigra	brain
23	chr4:99529400-99536200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr4:99529400-99536400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr4:99529400-99536400	Enhancers	Brain Angular Gyrus	brain
26	chr4:99529400-99536600	Enhancers	Fetal Brain Male	brain
27	chr4:99529400-99539800	Enhancers	Brain Hippocampus Middle	brain
28	chr4:99529600-99532000	Enhancers	Primary T cells fromperipheralblood	blood
29	chr4:99529600-99533600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr4:99529600-99535600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr4:99529600-99535800	Enhancers	Brain Anterior Caudate	brain
32	chr4:99529600-99542400	Enhancers	Brain Cingulate Gyrus	brain
33	chr4:99529600-99543200	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr4:99529800-99531800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr4:99529800-99531800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr4:99529800-99536400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr4:99529800-99538600	Weak transcription	Lung	lung
38	chr4:99530000-99531800	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr4:99530000-99533800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr4:99530000-99535400	Weak transcription	Fetal Muscle Leg	muscle
41	chr4:99530000-99540600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr4:99530200-99533600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr4:99530200-99533800	Weak transcription	Primary hematopoietic stem cells	blood
44	chr4:99530200-99534000	Enhancers	Ovary	ovary
45	chr4:99530400-99531800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr4:99530400-99531800	Enhancers	Spleen	Spleen
47	chr4:99530400-99532200	Enhancers	H1 Cell Line	embryonic stem cell
48	chr4:99530400-99532400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr4:99530400-99534000	Weak transcription	Primary T cells from cord blood	blood
50	chr4:99530400-99537400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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