The 2.0 version of rSNPBase

Variant report

Variant rs6822225
Chromosome Location chr4:99539897-99539898
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:99523000-99545000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr4:99527200-99541000 Weak transcription NHLF lung
3 chr4:99529600-99542400 Enhancers Brain Cingulate Gyrus brain
4 chr4:99529600-99543200 Enhancers Cortex derived primary cultured neurospheres brain
5 chr4:99530000-99540600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
6 chr4:99531000-99544200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
7 chr4:99531200-99541400 Weak transcription Primary T regulatory cells fromperipheralblood blood
8 chr4:99532600-99545400 Weak transcription HMEC breast
9 chr4:99534000-99541400 Weak transcription H9 Cell Line embryonic stem cell
10 chr4:99534200-99541400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr4:99534400-99541200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
12 chr4:99534400-99543200 Weak transcription Thymus Thymus
13 chr4:99534600-99541000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
14 chr4:99535000-99541400 Weak transcription Primary T helper naive cells fromperipheralblood blood
15 chr4:99535000-99541600 Enhancers Ovary ovary
16 chr4:99535200-99541200 Weak transcription iPS-15b Cell Line embryonic stem cell
17 chr4:99535400-99540000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
18 chr4:99535400-99541000 Weak transcription iPS-20b Cell Line embryonic stem cell
19 chr4:99535400-99544200 Weak transcription NHEK skin
20 chr4:99535600-99541200 Weak transcription HUES6 Cell Line embryonic stem cell
21 chr4:99535600-99554200 Enhancers Brain Substantia Nigra brain
22 chr4:99536200-99545800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr4:99536400-99541000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
24 chr4:99536800-99541800 Enhancers Fetal Brain Female brain
25 chr4:99536800-99542400 Enhancers Brain Angular Gyrus brain
26 chr4:99537600-99544800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
27 chr4:99538000-99542200 Enhancers Fetal Brain Male brain
28 chr4:99538200-99541200 Enhancers Brain Inferior Temporal Lobe brain
29 chr4:99538200-99542600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
30 chr4:99538400-99541000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
31 chr4:99538400-99542000 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
32 chr4:99538400-99542200 Enhancers Brain Dorsolateral Prefrontal Cortex brain
33 chr4:99538400-99543800 Enhancers Brain Anterior Caudate brain
34 chr4:99539000-99541200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr4:99539000-99541200 Weak transcription Primary T killer naive cells fromperipheralblood blood
36 chr4:99539000-99541400 Weak transcription H1 Cell Line embryonic stem cell
37 chr4:99539000-99541400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
38 chr4:99539000-99541400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
39 chr4:99539000-99546400 Weak transcription Fetal Thymus thymus
40 chr4:99539000-99547200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
41 chr4:99539200-99540000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
42 chr4:99539200-99540200 Weak transcription Muscle Satellite Cultured Cells --
43 chr4:99539200-99540400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
44 chr4:99539200-99540400 Weak transcription Colon Smooth Muscle Colon
45 chr4:99539200-99540400 Weak transcription Fetal Muscle Leg muscle
46 chr4:99539200-99541000 Weak transcription Primary T cells fromperipheralblood blood
47 chr4:99539200-99541000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
48 chr4:99539200-99541200 Weak transcription NH-A brain
49 chr4:99539200-99541600 Weak transcription Breast Myoepithelial Primary Cells Breast
50 chr4:99539200-99543400 Weak transcription NHDF-Ad bronchial

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Last update: Aug 31, 2015