Variant report

Variant	rs59260686
Chromosome Location	chr2:182055576-182055577
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs56977169	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62180166	0.88[ASN][1000 genomes]
rs73025698	0.91[ASN][1000 genomes]
rs73027403	0.91[ASN][1000 genomes]
rs73027409	0.91[ASN][1000 genomes]
rs73027412	0.91[ASN][1000 genomes]
rs73027417	0.91[ASN][1000 genomes]
rs73027433	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73027437	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73027439	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73027441	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73027445	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73027455	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73027457	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73027466	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73027468	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73027474	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73027482	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73027499	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73027502	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73029106	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73029172	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73029178	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73029179	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73029181	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73029183	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs73029186	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73029188	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73976816	0.88[ASN][1000 genomes]
rs997716	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431824	chr2:181946115-182118559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182045400-182062000	Weak transcription	Dnd41	blood
2	chr2:182050800-182063400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr2:182053400-182055600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr2:182054000-182055600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr2:182054000-182055600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr2:182054200-182056200	Enhancers	HSMM	muscle
7	chr2:182054200-182056600	Enhancers	HSMMtube	muscle
8	chr2:182054600-182055600	Weak transcription	Primary T cells from cord blood	blood
9	chr2:182054800-182061400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr2:182055200-182056000	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr2:182055400-182055800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr2:182055400-182055800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr2:182055400-182055800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr2:182055400-182056000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr2:182055400-182056000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr2:182055400-182056000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr2:182055400-182056200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr2:182055400-182056200	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr2:182055400-182056200	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr2:182055400-182056600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr2:182055400-182056800	Enhancers	Primary T helper cells fromperipheralblood	blood

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