Variant report

Variant	rs59266655
Chromosome Location	chr12:21959494-21959495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:21958533..21960369-chr12:21961776..21963786,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs3741842	0.87[AFR][1000 genomes]
rs55794995	1.00[AFR][1000 genomes]
rs55812798	0.86[AFR][1000 genomes]
rs55839871	0.86[AFR][1000 genomes]
rs56172202	0.86[AFR][1000 genomes]
rs56224342	0.86[AFR][1000 genomes]
rs57232038	0.86[AFR][1000 genomes]
rs57749821	0.86[AFR][1000 genomes]
rs58679435	0.86[AFR][1000 genomes]
rs59299764	0.87[AFR][1000 genomes]
rs59824507	0.86[AFR][1000 genomes]
rs74066740	0.86[AFR][1000 genomes]
rs74066764	0.86[AFR][1000 genomes]
rs74066768	0.86[AFR][1000 genomes]
rs74066772	0.86[AFR][1000 genomes]
rs74066775	0.86[AFR][1000 genomes]
rs74066794	0.86[AFR][1000 genomes]
rs74066795	0.86[AFR][1000 genomes]
rs74067605	0.86[AFR][1000 genomes]
rs74067613	0.86[AFR][1000 genomes]
rs74067615	0.86[AFR][1000 genomes]
rs74067617	0.86[AFR][1000 genomes]
rs74067618	0.86[AFR][1000 genomes]
rs74067619	0.86[AFR][1000 genomes]
rs74067620	0.86[AFR][1000 genomes]
rs74067622	0.86[AFR][1000 genomes]
rs74067623	0.86[AFR][1000 genomes]
rs74067624	0.86[AFR][1000 genomes]
rs74067627	0.86[AFR][1000 genomes]
rs74067629	0.86[AFR][1000 genomes]
rs74067644	0.86[AFR][1000 genomes]
rs74067645	0.86[AFR][1000 genomes]
rs74067646	0.86[AFR][1000 genomes]
rs74067649	0.86[AFR][1000 genomes]
rs74067651	0.86[AFR][1000 genomes]
rs74067652	0.86[AFR][1000 genomes]
rs74067653	0.86[AFR][1000 genomes]
rs74067654	0.86[AFR][1000 genomes]
rs74067657	0.86[AFR][1000 genomes]
rs74067658	0.86[AFR][1000 genomes]
rs74067680	0.86[AFR][1000 genomes]
rs74069162	1.00[AFR][1000 genomes]
rs74069171	1.00[AFR][1000 genomes]
rs74069308	0.86[AFR][1000 genomes]
rs74069309	0.86[AFR][1000 genomes]
rs74069310	0.86[AFR][1000 genomes]
rs74069324	0.86[AFR][1000 genomes]
rs74069784	0.87[AFR][1000 genomes]
rs74070309	0.87[AFR][1000 genomes]
rs74070310	0.87[AFR][1000 genomes]
rs74070311	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043936	chr12:21562673-21979030	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv557741	chr12:21578559-22169854	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv469164	chr12:21688900-21966701	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv557744	chr12:21688900-21966701	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1051073	chr12:21910875-22271209	Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv470275	chr12:21938544-22126314	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21949600-21961400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr12:21950800-21966200	Weak transcription	Fetal Heart	heart
3	chr12:21953400-21966800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr12:21953400-21971600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr12:21953800-21981000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr12:21954200-21972200	Weak transcription	Fetal Kidney	kidney
7	chr12:21954400-21980600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr12:21954600-21960800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr12:21955800-21971600	Weak transcription	Ovary	ovary
10	chr12:21955800-21973600	Weak transcription	Right Ventricle	heart
11	chr12:21956800-21968400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr12:21957200-21971200	Strong transcription	Skeletal Muscle Female	skeletal muscle
13	chr12:21957600-21959800	Strong transcription	Skeletal Muscle Male	skeletal muscle
14	chr12:21958200-21968200	Weak transcription	Adipose Nuclei	Adipose
15	chr12:21958200-21969200	Weak transcription	Left Ventricle	heart
16	chr12:21958200-21981200	Weak transcription	Fetal Muscle Leg	muscle
17	chr12:21958400-21980000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr12:21958400-22003000	Weak transcription	Psoas Muscle	Psoas
19	chr12:21959200-21960600	Genic enhancers	Liver	Liver

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