Variant report
| Variant | rs74067613 |
|---|---|
| Chromosome Location | chr12:21855284-21855285 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:21853672..21855818-chr12:22198436..22200574,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000111726 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:49)
| rs_ID | r2[population] |
|---|---|
| rs55794995 | 0.86[AFR][1000 genomes] |
| rs55812798 | 1.00[AFR][1000 genomes] |
| rs55839871 | 1.00[AFR][1000 genomes] |
| rs56172202 | 1.00[AFR][1000 genomes] |
| rs56224342 | 1.00[AFR][1000 genomes] |
| rs57232038 | 1.00[AFR][1000 genomes] |
| rs57749821 | 1.00[AFR][1000 genomes] |
| rs58679435 | 1.00[AFR][1000 genomes] |
| rs59266655 | 0.86[AFR][1000 genomes] |
| rs59824507 | 1.00[AFR][1000 genomes] |
| rs74066740 | 1.00[AFR][1000 genomes] |
| rs74066764 | 1.00[AFR][1000 genomes] |
| rs74066768 | 1.00[AFR][1000 genomes] |
| rs74066772 | 1.00[AFR][1000 genomes] |
| rs74066775 | 1.00[AFR][1000 genomes] |
| rs74066794 | 1.00[AFR][1000 genomes] |
| rs74066795 | 1.00[AFR][1000 genomes] |
| rs74067605 | 1.00[AFR][1000 genomes] |
| rs74067615 | 1.00[AFR][1000 genomes] |
| rs74067617 | 1.00[AFR][1000 genomes] |
| rs74067618 | 1.00[AFR][1000 genomes] |
| rs74067619 | 1.00[AFR][1000 genomes] |
| rs74067620 | 1.00[AFR][1000 genomes] |
| rs74067622 | 1.00[AFR][1000 genomes] |
| rs74067623 | 1.00[AFR][1000 genomes] |
| rs74067624 | 1.00[AFR][1000 genomes] |
| rs74067627 | 1.00[AFR][1000 genomes] |
| rs74067629 | 1.00[AFR][1000 genomes] |
| rs74067644 | 1.00[AFR][1000 genomes] |
| rs74067645 | 1.00[AFR][1000 genomes] |
| rs74067646 | 1.00[AFR][1000 genomes] |
| rs74067649 | 1.00[AFR][1000 genomes] |
| rs74067651 | 1.00[AFR][1000 genomes] |
| rs74067652 | 1.00[AFR][1000 genomes] |
| rs74067653 | 1.00[AFR][1000 genomes] |
| rs74067654 | 1.00[AFR][1000 genomes] |
| rs74067657 | 1.00[AFR][1000 genomes] |
| rs74067658 | 1.00[AFR][1000 genomes] |
| rs74067680 | 1.00[AFR][1000 genomes] |
| rs74067810 | 0.86[AFR][1000 genomes] |
| rs74067812 | 0.86[AFR][1000 genomes] |
| rs74067860 | 0.86[AFR][1000 genomes] |
| rs74069162 | 0.86[AFR][1000 genomes] |
| rs74069171 | 0.86[AFR][1000 genomes] |
| rs74069308 | 1.00[AFR][1000 genomes] |
| rs74069309 | 1.00[AFR][1000 genomes] |
| rs74069310 | 1.00[AFR][1000 genomes] |
| rs74069324 | 1.00[AFR][1000 genomes] |
| rs74069330 | 0.86[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1043936 | chr12:21562673-21979030 | ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 46 gene(s) | inside rSNPs | diseases |
| 2 | nsv557741 | chr12:21578559-22169854 | Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 50 gene(s) | inside rSNPs | diseases |
| 3 | nsv469164 | chr12:21688900-21966701 | Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 4 | nsv557744 | chr12:21688900-21966701 | Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 5 | nsv832349 | chr12:21749093-21930695 | Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
