Variant report

Variant	rs59285351
Chromosome Location	chr1:145508146-145508147
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:103)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:103 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GABPA	chr1:145506755-145508313	MCF-7	breast:	n/a	n/a
2	WRNIP1	chr1:145507173-145508627	GM12878	blood:	n/a	n/a
3	POLR2A	chr1:145506794-145508380	PFSK-1	brain:	n/a	n/a
4	POLR2A	chr1:145507268-145508178	MCF-7	breast:	n/a	n/a
5	POLR2A	chr1:145507188-145508306	ProgFib	skin:	n/a	n/a
6	MAX	chr1:145507223-145508170	HepG2	liver:	n/a	n/a
7	POLR2A	chr1:145507054-145508266	HUVEC	blood vessel:	n/a	n/a
8	RELA	chr1:145507198-145508152	GM15510	blood:	n/a	n/a
9	SIX5	chr1:145507139-145508223	A549	lung:	n/a	n/a
10	SP1	chr1:145507095-145508193	HCT-116	colon:	n/a	chr1:145507510-145507521 chr1:145507543-145507554
11	POLR2A	chr1:145508030-145508293	H1-hESC	embryonic stem cell:	n/a	n/a
12	POLR2A	chr1:145507170-145508305	K562	blood:	n/a	n/a
13	CTCF	chr1:145508120-145508270	WERI-Rb-1	eye:	n/a	n/a
14	CTCF	chr1:145508020-145508170	AG04449	skin:	n/a	n/a
15	MAX	chr1:145506978-145508231	MCF-7	breast:	n/a	n/a
16	YY1	chr1:145507049-145508271	GM12878	blood:	n/a	n/a
17	TAF1	chr1:145506966-145508287	H1-hESC	embryonic stem cell:	n/a	n/a
18	POLR2A	chr1:145506893-145508207	HUVEC	blood vessel:	n/a	n/a
19	NR2C2	chr1:145507341-145508173	Hela-S3	cervix:	n/a	chr1:145507588-145507603
20	POLR2A	chr1:145505823-145508230	Hela-S3	cervix:	n/a	n/a
21	POLR2A	chr1:145506480-145508753	GM12892	blood:	n/a	n/a
22	GABPA	chr1:145506921-145508282	MCF-7	breast:	n/a	n/a
23	TEAD4	chr1:145506976-145508155	K562	blood:	n/a	n/a
24	POLR2A	chr1:145506498-145508251	GM12892	blood:	n/a	n/a
25	ELF1	chr1:145507216-145508303	GM12878	blood:	n/a	n/a
26	POLR2A	chr1:145505986-145508219	GM12878	blood:	n/a	n/a
27	PML	chr1:145506787-145508308	GM12878	blood:	n/a	n/a
28	MXI1	chr1:145506840-145508585	SK-N-SH	brain:	n/a	n/a
29	POLR2A	chr1:145507226-145508357	GM12878	blood:	n/a	n/a
30	PML	chr1:145506951-145508154	MCF-7	breast:	n/a	n/a
31	GATA3	chr1:145506794-145508222	MCF-7	breast:	n/a	n/a
32	RUNX3	chr1:145507137-145508516	GM12878	blood:	n/a	n/a
33	MAX	chr1:145507215-145508321	K562	blood:	n/a	n/a
34	BATF	chr1:145508004-145508502	GM12878	blood:	n/a	n/a
35	POLR2A	chr1:145507124-145508159	H1-neurons	neurons:	n/a	n/a
36	YY1	chr1:145507034-145508200	A549	lung:	n/a	n/a
37	POLR2A	chr1:145506768-145508354	Hela-S3	cervix:	n/a	n/a
38	POLR2A	chr1:145507217-145508241	GM19193	blood:	n/a	n/a
39	YY1	chr1:145506994-145508228	GM12878	blood:	n/a	n/a
40	POLR2A	chr1:145506035-145508594	GM12892	blood:	n/a	n/a
41	POU2F2	chr1:145507244-145508223	GM12891	blood:	n/a	n/a
42	POLR2A	chr1:145506878-145508199	MCF10A-Er-Src	breast:	n/a	n/a
43	SIN3AK20	chr1:145506949-145508592	MCF-7	breast:	n/a	n/a
44	POLR2A	chr1:145507208-145508199	H1-hESC	embryonic stem cell:	n/a	n/a
45	MAX	chr1:145507047-145508233	A549	lung:	n/a	n/a
46	POLR2A	chr1:145505490-145508398	HepG2	liver:	n/a	n/a
47	GATA3	chr1:145506981-145508328	MCF-7	breast:	n/a	n/a
48	POLR2A	chr1:145506553-145508192	GM18505	blood:	n/a	n/a
49	POLR2A	chr1:145507273-145508157	MCF-7	breast:	n/a	n/a
50	EGR1	chr1:145506978-145508306	MCF-7	breast:	n/a	n/a

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:145493306..145495784-chr1:145507873..145510196,2	K562	blood:
2	chr1:145504994..145509071-chr1:145573936..145577350,5	K562	blood:
3	chr1:145507347..145508204-chr7:107203872..107204602,2	Hela-S3	cervix:
4	chr1:145435330..145439919-chr1:145503470..145509114,6	MCF-7	breast:
5	chr1:145506288..145509580-chr1:145587874..145591202,3	K562	blood:
6	chr1:145436895..145441140-chr1:145504711..145508916,4	K562	blood:
7	chr1:145468632..145473669-chr1:145505743..145509110,22	MCF-7	breast:
8	chr1:145474833..145479924-chr1:145501554..145508897,13	MCF-7	breast:
9	chr1:145380937..145386297-chr1:145506337..145510366,6	MCF-7	breast:
10	chr1:145440246..145445618-chr1:145506865..145509081,5	MCF-7	breast:
11	chr1:145475515..145478637-chr1:145505981..145508969,5	K562	blood:
12	chr1:145506238..145508483-chr20:52209033..52210545,2	MCF-7	breast:
13	chr1:145380733..145384556-chr1:145505855..145508677,5	MCF-7	breast:
14	chr1:145474024..145477479-chr1:145506133..145509448,3	K562	blood:
15	chr1:145506866..145509017-chr1:145610582..145612345,2	MCF-7	breast:
16	chr1:145467554..145481966-chr1:145501054..145522102,70	MCF-7	breast:
17	chr1:145507578..145508153-chr12:7052877..7053452,2	Hela-S3	cervix:
18	chr1:145469135..145471440-chr1:145505996..145509042,5	K562	blood:
19	chr1:145506038..145509641-chr1:145574245..145576920,6	K562	blood:
20	chr1:145381491..145385233-chr1:145505736..145509112,5	K562	blood:
21	chr1:145438818..145442266-chr1:145506169..145508690,3	MCF-7	breast:
22	chr1:145506283..145508491-chr1:145609392..145611580,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000234222	TF binding region
ENSG00000171940	Chromatin interaction
ENSG00000201558	Chromatin interaction
ENSG00000152022	Chromatin interaction
ENSG00000105865	Chromatin interaction
ENSG00000121851	Chromatin interaction
ENSG00000117289	Chromatin interaction
ENSG00000111678	Chromatin interaction
ENSG00000238923	Chromatin interaction
ENSG00000186364	Chromatin interaction
ENSG00000233396	Chromatin interaction
ENSG00000181039	Chromatin interaction
ENSG00000234222	Chromatin interaction
ENSG00000131788	Chromatin interaction
ENSG00000121848	Chromatin interaction
ENSG00000164597	Chromatin interaction
ENSG00000186141	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12078014	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12079763	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12239611	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12239855	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2274620	1.00[EUR][1000 genomes]
rs58029825	1.00[EUR][1000 genomes]
rs59489049	1.00[EUR][1000 genomes]
rs59886312	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61495668	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73006812	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:81 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005055	chr1:144893406-145792052	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	381 gene(s)	inside rSNPs	diseases
2	nsv432720	chr1:144956393-145727683	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
3	nsv998771	chr1:144986365-145687024	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	362 gene(s)	inside rSNPs	diseases
4	nsv535079	chr1:144986365-145687024	Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	362 gene(s)	inside rSNPs	diseases
5	nsv933296	chr1:144994945-145740657	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	359 gene(s)	inside rSNPs	diseases
6	nsv1000082	chr1:145081821-145687024	Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	347 gene(s)	inside rSNPs	diseases
7	nsv535081	chr1:145081821-145687024	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	347 gene(s)	inside rSNPs	diseases
8	nsv1013638	chr1:145172973-146012524	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	339 gene(s)	inside rSNPs	diseases
9	esv2422428	chr1:145259792-145609308	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	308 gene(s)	inside rSNPs	diseases
10	nsv1002731	chr1:145276259-145792052	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	327 gene(s)	inside rSNPs	diseases
11	nsv532247	chr1:145291698-146037042	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	335 gene(s)	inside rSNPs	diseases
12	nsv532393	chr1:145304668-145738275	Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	325 gene(s)	inside rSNPs	diseases
13	nsv532248	chr1:145310253-145899398	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	329 gene(s)	inside rSNPs	diseases
14	nsv872224	chr1:145341400-145900678	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	329 gene(s)	inside rSNPs	diseases
15	nsv948894	chr1:145366695-145727683	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	323 gene(s)	inside rSNPs	diseases
16	nsv432731	chr1:145366956-145727956	Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	323 gene(s)	inside rSNPs	diseases
17	nsv872225	chr1:145367196-145900678	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	329 gene(s)	inside rSNPs	diseases
18	nsv918206	chr1:145372550-145792052	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	326 gene(s)	inside rSNPs	diseases
19	nsv918131	chr1:145372550-146012524	Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
20	nsv1007296	chr1:145372551-145792052	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	326 gene(s)	inside rSNPs	diseases
21	nsv917908	chr1:145372551-145932457	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	329 gene(s)	inside rSNPs	diseases
22	esv2761653	chr1:145382124-145932468	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	329 gene(s)	inside rSNPs	diseases
23	nsv547654	chr1:145384225-145747463	Weak transcription Genic enhancers Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	163 gene(s)	inside rSNPs	diseases
24	nsv872227	chr1:145385675-145509312	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
25	nsv872228	chr1:145385675-145598459	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
26	nsv872229	chr1:145385675-145771576	Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
27	nsv872230	chr1:145385675-145789110	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
28	nsv547655	chr1:145388137-145730160	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
29	nsv532396	chr1:145388355-145746971	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	142 gene(s)	inside rSNPs	diseases
30	nsv532400	chr1:145388355-145799602	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	143 gene(s)	inside rSNPs	diseases
31	nsv532399	chr1:145388355-145825847	Active TSS Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
32	nsv532398	chr1:145388355-145917640	Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
33	nsv917018	chr1:145388369-145899418	Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
34	nsv1001857	chr1:145388977-145743966	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
35	nsv997343	chr1:145388977-145746709	Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
36	nsv535083	chr1:145388977-145746709	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
37	nsv1006753	chr1:145391749-145792052	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	142 gene(s)	inside rSNPs	diseases
38	nsv872231	chr1:145394955-145598459	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
39	nsv463417	chr1:145394955-145681484	Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
40	nsv547656	chr1:145394955-145681484	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
41	nsv463428	chr1:145394955-145747463	Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
42	nsv463439	chr1:145394955-145747463	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
43	nsv547657	chr1:145394955-145747463	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
44	nsv547658	chr1:145394955-145776593	Bivalent/Poised TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
45	nsv547659	chr1:145394955-145780243	Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
46	nsv432742	chr1:145395604-145727956	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
47	nsv1011556	chr1:145399902-145743966	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
48	nsv1004250	chr1:145399902-145746709	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
49	esv2830397	chr1:145401238-145799743	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
50	nsv831370	chr1:145401253-145606187	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:145506400-145508200	Active TSS	Hela-S3	cervix
2	chr1:145506400-145508400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:145506600-145508200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:145506600-145508200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:145506600-145508200	Active TSS	Osteobl	bone
6	chr1:145506600-145508400	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr1:145506600-145508400	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr1:145506600-145508400	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr1:145506600-145508400	Active TSS	A549	lung
10	chr1:145506600-145508400	Active TSS	HSMM	muscle
11	chr1:145506600-145508400	Active TSS	HSMMtube	muscle
12	chr1:145506600-145508400	Active TSS	NHLF	lung
13	chr1:145506800-145508200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:145506800-145508200	Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr1:145506800-145508200	Active TSS	Brain Angular Gyrus	brain
16	chr1:145506800-145508200	Active TSS	Brain Cingulate Gyrus	brain
17	chr1:145506800-145508200	Active TSS	Brain Hippocampus Middle	brain
18	chr1:145506800-145508200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr1:145506800-145508200	Active TSS	Duodenum Mucosa	Duodenum
20	chr1:145506800-145508200	Active TSS	Fetal Brain Female	brain
21	chr1:145506800-145508200	Active TSS	Fetal Lung	lung
22	chr1:145506800-145508200	Active TSS	Left Ventricle	heart
23	chr1:145506800-145508200	Active TSS	Right Atrium	heart
24	chr1:145506800-145508200	Active TSS	HUVEC	blood vessel
25	chr1:145506800-145508200	Active TSS	NHEK	skin
26	chr1:145506800-145508400	Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr1:145506800-145508400	Active TSS	H1 Cell Line	embryonic stem cell
28	chr1:145506800-145508400	Active TSS	H9 Cell Line	embryonic stem cell
29	chr1:145506800-145508400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr1:145506800-145508400	Active TSS	HUES48 Cell Line	embryonic stem cell
31	chr1:145506800-145508400	Active TSS	iPS-18 Cell Line	embryonic stem cell
32	chr1:145506800-145508400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr1:145506800-145508400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr1:145506800-145508400	Active TSS	Muscle Satellite Cultured Cells	--
35	chr1:145506800-145508400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr1:145506800-145508400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr1:145506800-145508400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
38	chr1:145506800-145508400	Active TSS	Colonic Mucosa	Colon
39	chr1:145506800-145508400	Active TSS	Esophagus	oesophagus
40	chr1:145506800-145508400	Active TSS	Fetal Intestine Small	intestine
41	chr1:145506800-145508400	Active TSS	Fetal Kidney	kidney
42	chr1:145506800-145508400	Active TSS	Pancreatic Islets	Pancreatic Islet
43	chr1:145506800-145508400	Active TSS	Gastric	stomach
44	chr1:145506800-145508400	Active TSS	Pancreas	Pancrea
45	chr1:145506800-145508400	Active TSS	Rectal Mucosa Donor 29	rectum
46	chr1:145506800-145508400	Active TSS	Right Ventricle	heart
47	chr1:145506800-145508400	Active TSS	Small Intestine	intestine
48	chr1:145506800-145508400	Active TSS	Thymus	Thymus
49	chr1:145506800-145508400	Active TSS	GM12878-XiMat	blood
50	chr1:145506800-145508400	Active TSS	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links