Variant report

Variant	rs59287866
Chromosome Location	chr11:108817430-108817431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1469274	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17108759	0.91[ASN][1000 genomes]
rs17703817	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1820403	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2553769	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2615734	0.82[ASN][1000 genomes]
rs2726905	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2726924	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57196252	0.95[ASN][1000 genomes]
rs7103209	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72993315	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72993517	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72993528	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72993554	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7944806	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108800800-108818000	Weak transcription	HMEC	breast
2	chr11:108805200-108829600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:108808800-108819000	Weak transcription	HepG2	liver
4	chr11:108809600-108817600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:108809600-108819600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:108810200-108829000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:108811400-108817800	Weak transcription	Gastric	stomach
8	chr11:108811400-108818400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:108811600-108818200	Weak transcription	A549	lung
10	chr11:108811600-108819400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr11:108811800-108818200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:108812000-108817600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:108812000-108818200	Weak transcription	K562	blood
14	chr11:108812000-108818800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:108812000-108822200	Weak transcription	Pancreas	Pancrea
16	chr11:108812000-108823400	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr11:108812200-108818200	Weak transcription	NHEK	skin
18	chr11:108812200-108818400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr11:108812200-108818800	Weak transcription	Ovary	ovary
20	chr11:108812200-108828800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:108812400-108818200	Weak transcription	NH-A	brain
22	chr11:108812600-108818400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:108812800-108818200	Weak transcription	Lung	lung
24	chr11:108812800-108818800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:108813000-108818600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:108813000-108818600	Weak transcription	Liver	Liver
27	chr11:108813000-108819200	Weak transcription	Primary B cells from cord blood	blood
28	chr11:108813200-108817800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr11:108813400-108818600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:108813400-108818800	Weak transcription	HUVEC	blood vessel
31	chr11:108815000-108817600	Weak transcription	HSMM	muscle
32	chr11:108815000-108819000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:108815000-108819200	Weak transcription	Primary T cells from cord blood	blood
34	chr11:108815200-108819000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:108815600-108818400	Weak transcription	Fetal Muscle Leg	muscle

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