Variant report

Variant	rs2726924
Chromosome Location	chr11:108724300-108724301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:108717216..108720020-chr11:108723886..108726081,2	K562	blood:
2	chr11:108722445..108725318-chr11:108725821..108728693,2	MCF-7	breast:
3	chr11:108723598..108725944-chr11:108749030..108751490,2	K562	blood:
4	chr11:108722635..108725308-chr11:108736229..108737984,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1466502	0.95[YRI][hapmap]
rs1469274	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.89[MEX][hapmap];0.98[MKK][hapmap];0.82[TSI][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1531470	0.84[ASW][hapmap];0.95[GIH][hapmap];0.95[MKK][hapmap]
rs17108759	0.91[ASN][1000 genomes]
rs17703817	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1820403	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1947928	1.00[ASW][hapmap];0.95[GIH][hapmap];0.95[LWK][hapmap];0.91[MKK][hapmap];0.96[YRI][hapmap]
rs1947929	1.00[ASW][hapmap];0.95[GIH][hapmap];0.97[LWK][hapmap];0.91[MKK][hapmap];0.96[YRI][hapmap]
rs2061680	0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs2126570	0.88[YRI][hapmap];0.87[AFR][1000 genomes]
rs2553769	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];0.82[TSI][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2615734	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2726876	0.88[YRI][hapmap];0.85[AFR][1000 genomes]
rs2726880	0.95[GIH][hapmap];0.94[MKK][hapmap]
rs2726887	0.92[ASW][hapmap];0.95[GIH][hapmap];0.97[LWK][hapmap];0.98[MKK][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs2726905	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59287866	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7103209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7124142	0.95[GIH][hapmap]
rs7130825	0.95[GIH][hapmap]
rs71489923	0.91[ASN][1000 genomes]
rs72993315	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72993517	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72993528	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72993554	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931638	0.91[GIH][hapmap]
rs7944806	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108680600-108724400	Weak transcription	Aorta	Aorta
2	chr11:108701000-108724400	Weak transcription	NHEK	skin
3	chr11:108706600-108724400	Weak transcription	Small Intestine	intestine
4	chr11:108706800-108724600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr11:108707200-108724400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr11:108707600-108740800	Weak transcription	HMEC	breast
7	chr11:108708000-108724400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr11:108708000-108724400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr11:108708000-108724600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr11:108708200-108724400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr11:108708200-108724400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:108708200-108724600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr11:108708200-108729200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr11:108708400-108724400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:108708600-108724800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr11:108709800-108724800	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr11:108709800-108724800	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr11:108710000-108724400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr11:108710200-108724400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr11:108710200-108729200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr11:108710200-108729400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr11:108710200-108735800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr11:108710200-108738200	Weak transcription	Gastric	stomach
24	chr11:108710400-108724400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr11:108710600-108724600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:108710600-108729800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:108710800-108724600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr11:108711000-108724400	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr11:108711000-108724400	Weak transcription	GM12878-XiMat	blood
30	chr11:108712200-108724400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:108712400-108725000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:108714000-108724400	Weak transcription	Primary B cells from peripheral blood	blood
33	chr11:108714800-108724400	Weak transcription	NHLF	lung
34	chr11:108715400-108724600	Weak transcription	HSMM	muscle
35	chr11:108715400-108738200	Weak transcription	K562	blood
36	chr11:108715600-108724600	Weak transcription	Primary hematopoietic stem cells	blood
37	chr11:108715600-108725200	Weak transcription	Liver	Liver
38	chr11:108717400-108724800	Weak transcription	Primary B cells from cord blood	blood
39	chr11:108717600-108729600	Weak transcription	Dnd41	blood
40	chr11:108717800-108724400	Weak transcription	Ovary	ovary
41	chr11:108717800-108729400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr11:108721000-108725000	Enhancers	Fetal Lung	lung
43	chr11:108721400-108728200	Weak transcription	Lung	lung
44	chr11:108721600-108742200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr11:108721800-108724400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:108722200-108724800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr11:108722600-108725000	Enhancers	NHDF-Ad	bronchial
48	chr11:108723000-108724400	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr11:108723200-108724400	Enhancers	Primary T cells from cord blood	blood
50	chr11:108723200-108724400	Enhancers	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links