Variant report

Variant	rs17703817
Chromosome Location	chr11:108802737-108802738
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1469274	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17108759	1.00[ASN][1000 genomes]
rs1820403	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2553769	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2615734	0.91[ASN][1000 genomes]
rs2726880	0.95[GIH][hapmap]
rs2726887	0.95[GIH][hapmap]
rs2726905	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2726924	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57196252	0.87[ASN][1000 genomes]
rs59287866	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7103209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114472	0.86[AFR][1000 genomes]
rs7124142	0.95[GIH][hapmap];0.94[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap]
rs7129535	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs71489923	0.82[ASN][1000 genomes]
rs72993315	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72993517	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72993528	0.96[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72993554	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7939610	0.82[AFR][1000 genomes]
rs7944806	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7946592	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	esv3488156	chr11:108801288-108804772	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3488155	chr11:108801392-108805290	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3488153	chr11:108801792-108805290	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv3466341	chr11:108802366-108804205	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	esv3488154	chr11:108802391-108804196	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	esv3466374	chr11:108802401-108804230	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	esv3488160	chr11:108802410-108804214	Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	esv3488159	chr11:108802413-108804159	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	esv3466330	chr11:108802424-108804215	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
14	esv3488158	chr11:108802441-108804170	Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
15	esv3466363	chr11:108802445-108804201	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
16	esv3488157	chr11:108802460-108804175	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
17	esv3466352	chr11:108802504-108804129	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
18	esv3488161	chr11:108802514-108804129	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
19	esv10269	chr11:108802515-108804125	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
20	esv3466385	chr11:108802518-108804127	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
21	esv3488162	chr11:108802518-108804127	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108728400-108810600	Weak transcription	Left Ventricle	heart
2	chr11:108768000-108810600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:108778200-108810600	Weak transcription	Ovary	ovary
4	chr11:108780600-108810600	Weak transcription	Pancreas	Pancrea
5	chr11:108781600-108810400	Weak transcription	GM12878-XiMat	blood
6	chr11:108783000-108810600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr11:108784400-108804000	Weak transcription	K562	blood
8	chr11:108785200-108807800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:108786400-108810600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr11:108787000-108810800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr11:108787200-108815000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr11:108787400-108810600	Weak transcription	Liver	Liver
13	chr11:108790200-108810600	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr11:108791200-108810600	Weak transcription	Dnd41	blood
15	chr11:108791400-108810800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr11:108791600-108810800	Weak transcription	Primary B cells from peripheral blood	blood
17	chr11:108792200-108804600	Weak transcription	Primary B cells from cord blood	blood
18	chr11:108792200-108808600	Weak transcription	Primary T cells from cord blood	blood
19	chr11:108794600-108807800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:108794600-108810000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr11:108794600-108810600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:108794600-108810600	Weak transcription	Aorta	Aorta
23	chr11:108794600-108811800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr11:108794800-108810600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:108797200-108811200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr11:108797400-108816200	Weak transcription	Fetal Intestine Small	intestine
27	chr11:108797800-108805000	Weak transcription	Fetal Kidney	kidney
28	chr11:108797800-108805000	Enhancers	Osteobl	bone
29	chr11:108798200-108813000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr11:108798200-108814800	Weak transcription	Brain Anterior Caudate	brain
31	chr11:108798400-108811000	Weak transcription	Fetal Stomach	stomach
32	chr11:108798800-108811000	Weak transcription	Fetal Muscle Trunk	muscle
33	chr11:108798800-108814600	Weak transcription	Fetal Muscle Leg	muscle
34	chr11:108799000-108804600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr11:108799000-108804600	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr11:108799200-108812000	Weak transcription	Thymus	Thymus
37	chr11:108799400-108807800	Weak transcription	Fetal Thymus	thymus
38	chr11:108800000-108810600	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr11:108800200-108804000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:108800200-108810600	Weak transcription	HSMM	muscle
41	chr11:108800200-108811200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr11:108800400-108807800	Weak transcription	Fetal Heart	heart
43	chr11:108800600-108804400	Weak transcription	NHDF-Ad	bronchial
44	chr11:108800600-108810600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr11:108800600-108810800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr11:108800800-108818000	Weak transcription	HMEC	breast
47	chr11:108801000-108810600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr11:108801600-108803600	Flanking Active TSS	A549	lung
49	chr11:108801800-108805000	Enhancers	NH-A	brain
50	chr11:108802000-108802800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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