Variant report

Variant	rs71489923
Chromosome Location	chr11:108667864-108667865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10732846	0.82[EUR][1000 genomes]
rs12787498	0.85[EUR][1000 genomes]
rs12799569	0.88[EUR][1000 genomes]
rs12807367	0.98[EUR][1000 genomes]
rs1466502	0.85[EUR][1000 genomes]
rs1469274	0.91[ASN][1000 genomes]
rs1531470	0.85[EUR][1000 genomes]
rs17108759	0.82[ASN][1000 genomes]
rs17703817	0.82[ASN][1000 genomes]
rs1820403	0.82[ASN][1000 genomes]
rs1870925	0.82[EUR][1000 genomes]
rs1947928	0.85[EUR][1000 genomes]
rs1947929	0.83[EUR][1000 genomes]
rs2061680	0.98[EUR][1000 genomes]
rs2126570	0.93[EUR][1000 genomes]
rs2553769	0.82[ASN][1000 genomes]
rs2615721	0.98[EUR][1000 genomes]
rs2615734	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2615735	0.95[EUR][1000 genomes]
rs2615738	0.85[EUR][1000 genomes]
rs2726876	0.98[EUR][1000 genomes]
rs2726880	0.95[EUR][1000 genomes]
rs2726887	0.95[EUR][1000 genomes]
rs2726891	0.85[EUR][1000 genomes]
rs2726905	0.91[ASN][1000 genomes]
rs2726924	0.91[ASN][1000 genomes]
rs34746018	0.85[EUR][1000 genomes]
rs35234597	0.85[EUR][1000 genomes]
rs35396330	0.88[EUR][1000 genomes]
rs3951111	0.85[EUR][1000 genomes]
rs4754342	0.88[EUR][1000 genomes]
rs6589029	0.88[EUR][1000 genomes]
rs67069086	0.85[EUR][1000 genomes]
rs7103209	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7124142	0.85[EUR][1000 genomes]
rs7129535	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7130825	0.85[EUR][1000 genomes]
rs71489910	0.87[EUR][1000 genomes]
rs71489912	0.88[EUR][1000 genomes]
rs71489921	0.95[EUR][1000 genomes]
rs72993315	0.82[ASN][1000 genomes]
rs72993517	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs72993528	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs72993554	0.91[ASN][1000 genomes]
rs7931638	0.85[EUR][1000 genomes]
rs7944806	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108644400-108675400	Weak transcription	Primary T cells from cord blood	blood
2	chr11:108657800-108688200	Weak transcription	NHEK	skin
3	chr11:108659800-108670600	Weak transcription	Pancreas	Pancrea
4	chr11:108659800-108675000	Weak transcription	Psoas Muscle	Psoas
5	chr11:108659800-108676800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:108662200-108674600	Weak transcription	GM12878-XiMat	blood
7	chr11:108664200-108671400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:108664200-108674600	Weak transcription	Brain Substantia Nigra	brain
9	chr11:108664200-108691000	Weak transcription	K562	blood
10	chr11:108667000-108679800	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr11:108667800-108668200	Weak transcription	H9 Cell Line	embryonic stem cell

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